RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB82358", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB82358 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16717560 16717560 PRJEB82358_P_NODE_20574_length_229_cov_3.769231_g20563_i0 PRJEB82358 20574 229 3.769231 8.63153899 Pseudodesulfovibrio tunisiensis 463192 Bacteria Bacteria 65.8 2.62e-6   NTclustered gi|2215688239|gb|CP094380.1| 463192 g20563 i0 91.667 0.209606986899563 48 2 21 2 7 53 2566645 2566599 Pseudodesulfovibrio tunisiensis strain RB22 chromosome, complete genome blastn 48 65.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio tunisiensis
31804156 31804156 PRJEB82358_P_NODE_21737_length_219_cov_4.150685_g21726_i0 PRJEB82358 21737 219 4.150685 9.09000015 Geobacter sp. 46610 Bacteria Bacteria 58.9 5.15e-8   NR MBI5656735.1 46610 g21726 i0 36.8 1.04109589041096 76 43 97.3 1 218 6 105 180 MBI5656735.1 hypothetical protein [Geobacter sp.] diamond 228 58.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.
32721135 32721135 PRJEB82358_P_NODE_18180_length_244_cov_1.356725_g18169_i0 PRJEB82358 18180 244 1.356725 3.310409 Desulfuromonas versatilis 2802975 Bacteria Bacteria 106 1.71e-24   NR WP_221249366.1 2802975 g18169 i0 69.1 1.99180327868852 81 25 99.6 0 243 1 497 577 WP_221249366.1 DNA polymerase I [Desulfuromonas versatilis] diamond 486 106 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas versatilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;