RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB82358", tax_phylum = "Nitrospirota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB82358 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
140799 140799 PRJEB82358_P_NODE_16221_length_254_cov_1.784530_g16210_i0 PRJEB82358 16221 254 1.78453 4.5327062 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 176 1.31e-39   NTclustered gi|2449738114|gb|CP114561.1| 2927580 g16210 i0 80.08 75.0236220472441 251 38 96 11 10 254 3416475 3416719 MAG: Candidatus Manganitrophus sp. isolate GAC4 chromosome, complete genome blastn 19056 176 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
28581957 28581957 PRJEB82358_P_NODE_13247_length_277_cov_3.230392_g13236_i0 PRJEB82358 13247 277 3.230392 8.94818584 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 75.5 7.4e-14   NR MDA8100366.1 2026770 g13236 i0 58.7 0.682310469314079 63 26 68.2 0 89 277 19 81 MDA8100366.1 hypothetical protein [Nitrospiraceae bacterium] diamond 189 75.5 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;