RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB82358", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJEB82358 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29465481 29465481 PRJEB82358_P_NODE_16910_length_250_cov_0.870056_g16899_i0 PRJEB82358 16910 250 0.870056 2.17514 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0499   NR MBI4024351.1 2026799 g16899 i0 35.2 0.852 71 35 82.8 3 214 8 118 179 MBI4024351.1 phosphoglycolate phosphatase [Verrucomicrobiota bacterium] diamond 213 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31329809 31329809 PRJEB82358_P_NODE_12676_length_283_cov_1.123810_g12665_i0 PRJEB82358 12676 283 1.12381 3.1803823 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 159 8.38e-49   NR MDE0837280.1 2562705 g12665 i0 100 0.858657243816254 81 0 85.9 0 40 282 1 81 MDE0837280.1 helix-turn-helix transcriptional regulator [Akkermansiaceae bacterium] diamond 243 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;