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contig_metadata

12 rows where bioproject = "PRJEB81463" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 12 ✖

tax_clade 1

bioproject 1

  • PRJEB81463 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
140643 140643 PRJEB81463_P_NODE_441_length_1438_cov_7.337729_g323_i0 PRJEB81463 441 1438 7.337729 105.51654302 Copromyxa protea 931554 Tubulinea other_Eukaryota 1266 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g323 i0 83.297 27.5785813630042 1389 217 96 11 17 1393 1 1386 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 39658 1266 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
5243273 5243273 PRJEB81463_P_NODE_6105_length_405_cov_2.680723_g5833_i0 PRJEB81463 6105 405 2.680723 10.85692815 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 647 0   NTclustered gi|423292025|gb|JQ519458.1| 704142 g5833 i0 95.545 99.1506172839506 404 18 99 0 1 404 199 602 Saccamoeba lacustris clone JG10.115_b9 actin gene, partial cds blastn 40156 647 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
5243276 5243276 PRJEB81463_P_NODE_6525_length_392_cov_1.457680_g6253_i0 PRJEB81463 6525 392 1.45768 5.7141056 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 725 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g6253 i0 100 77.4591836734694 392 0 100 0 1 392 1062 671 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 30364 725 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
6100537 6100537 PRJEB81463_P_NODE_28505_length_241_cov_3.279762_g28233_i0 PRJEB81463 28505 241 3.279762 7.90422642 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 222 1.56e-53   NTclustered gi|1042160947|dbj|LC102280.1| 239731 g28233 i0 85.253 1.82572614107884 217 30 90 2 26 241 348 133 Hartmannella cantabrigiensis gene for elongation factor 2 alpha, partial cds, strain: ALC3 blastn 440 224 0.991071428571429 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
9068005 9068005 PRJEB81463_P_NODE_6868_length_381_cov_5.766234_g6596_i0 PRJEB81463 6868 381 5.766234 21.96935154 Saccamoeba limax 136464 Tubulinea other_Eukaryota 697 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g6596 i0 99.737 23.0997375328084 380 1 99 0 2 381 1874 1495 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 8801 697 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
12894182 12894182 PRJEB81463_P_NODE_491_length_1382_cov_3.245989_g366_i0 PRJEB81463 491 1382 3.245989 44.85956798 Copromyxa protea 931554 Tubulinea other_Eukaryota 1548 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g366 i0 87.192 27.5586107091172 1382 151 98 16 1 1360 1378 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 38086 1548 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
12894193 12894193 PRJEB81463_P_NODE_5771_length_416_cov_5.107872_g5499_i0 PRJEB81463 5771 416 5.107872 21.24874752 Saccamoeba limax 136464 Tubulinea other_Eukaryota 739 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g5499 i0 98.801 42.1201923076923 417 2 99 1 2 415 745 1161 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 17522 739 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
17992013 17992013 PRJEB81463_P_NODE_2275_length_670_cov_4.340034_g2012_i0 PRJEB81463 2275 670 4.340034 29.0782278 Saccamoeba limax 136464 Tubulinea other_Eukaryota 1055 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g2012 i0 99.653 49.6880597014925 577 2 86 0 93 669 1 577 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 33291 1055 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
20541243 20541243 PRJEB81463_P_NODE_11037_length_306_cov_1.330472_g10765_i0 PRJEB81463 11037 306 1.330472 4.07124432 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 566 8.239999999999998e-157   NTclustered gi|909719645|gb|KT185625.1| 5778 g10765 i0 100 61.7941176470588 306 0 100 0 1 306 6365 6060 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 18909 566 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27192180 27192180 PRJEB81463_P_NODE_12642_length_290_cov_0.958525_g12370_i0 PRJEB81463 12642 290 0.958525 2.7797225 Amoeba proteus 5775 Tubulinea other_Eukaryota 143 5.45e-40   NR AKN09692.1 5775 g12370 i0 76 0.993103448275862 96 23 99.3 0 2 289 19 114 AKN09692.1 Tom40 [Amoeba proteus] diamond 288 143 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30729384 30729384 PRJEB81463_P_NODE_24754_length_246_cov_2.976879_g24482_i0 PRJEB81463 24754 246 2.976879 7.32312234 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 164 1.7099999999999998e-48   NR AFX73097.1 704142 g24482 i0 96.3 0.98780487804878 81 3 98.8 0 3 245 90 170 AFX73097.1 elongation factor 2 alpha, partial [Saccamoeba lacustris] diamond 243 164 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
31899205 31899205 PRJEB81463_P_NODE_20357_length_253_cov_0.866667_g20085_i0 PRJEB81463 20357 253 0.866667 2.19266751 Amoeba proteus 5775 Tubulinea other_Eukaryota 135 6.36e-37   NR AKN09689.1 5775 g20085 i0 73.8 0.99604743083004 84 22 99.6 0 1 252 88 171 AKN09689.1 Tom20 [Amoeba proteus] diamond 252 135 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;