RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB81463" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJEB81463 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7374860 7374860 PRJEB81463_P_NODE_11886_length_295_cov_1.490991_g11614_i0 PRJEB81463 11886 295 1.490991 4.39842345 Bacteria 2 Bacteria Bacteria 152 2.62e-32   NTclustered gi|374854163|dbj|AP011765.1| 34034 g11614 i0 95.745 42.0779661016949 94 4 32 0 1 94 12320 12413 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 12413 152 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
26685983 26685983 PRJEB81463_P_NODE_22281_length_250_cov_0.881356_g22009_i0 PRJEB81463 22281 250 0.881356 2.20339 delta proteobacterium NaphS2 88274 Bacteria Bacteria 99 4.07e-22   NR EFK08802.1 88274 g22009 i0 54.8 2.004 84 37 99.6 1 250 2 184 267 EFK08802.1 putative tRNA adenylyltransferase [delta proteobacterium NaphS2] diamond 501 99 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium NaphS2
29150496 29150496 PRJEB81463_P_NODE_23529_length_248_cov_0.891429_g23257_i0 PRJEB81463 23529 248 0.891429 2.21074392 Bradymonas sediminis 1548548 Bacteria Bacteria 83.2 1.48e-16   NR WP_111331689.1 1548548 g23257 i0 53.8 0.943548387096774 78 32 94.4 1 2 235 170 243 WP_111331689.1 hypothetical protein [Bradymonas sediminis] diamond 234 83.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
32657785 32657785 PRJEB81463_P_NODE_24460_length_247_cov_0.896552_g24188_i0 PRJEB81463 24460 247 0.896552 2.21448344 Deltaproteobacteria bacterium CG 2026735 Bacteria Bacteria 155 8.7e-45   NR PIV19751.1 1973969 g24188 i0 86.6 1.9919028340081 82 11 99.6 0 1 246 11 92 PIV19751.1 MAG: formyltransferase [Deltaproteobacteria bacterium CG03_land_8_20_14_0_80_45_14] diamond 492 155 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG03_land_8_20_14_0_80_45_14

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;