RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJEB81327" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB81327 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2690022 2690022 PRJEB81327_P_NODE_46043_length_251_cov_1.556180_g45435_i0 PRJEB81327 46043 251 1.55618 3.9060118 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 281 2.66e-71   NTclustered gi|575456455|gb|CP007128.1| 861299 g45435 i0 86.853 1 251 33 100 0 1 251 3210109 3210359 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 251 281 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7792040 7792040 PRJEB81327_P_NODE_32007_length_275_cov_1.217822_g31399_i0 PRJEB81327 32007 275 1.217822 3.3490105 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 298 2.94e-76   NTclustered gi|575456455|gb|CP007128.1| 861299 g31399 i0 86.232 106.301818181818 276 36 100 2 1 275 37290 37016 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 29233 298 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
11200547 11200547 PRJEB81327_P_NODE_67409_length_232_cov_2.572327_g66801_i0 PRJEB81327 67409 232 2.572327 5.96779864 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 141 4.11e-37   NR GJG85456.1 2839016 g66801 i0 85.7 2.98706896551724 77 11 99.6 0 232 2 76 152 GJG85456.1 glucosamine-6-phosphate deaminase [Gemmatimonadetes bacterium T265] diamond 693 141 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
15442447 15442447 PRJEB81327_P_NODE_43793_length_255_cov_1.082418_g43185_i0 PRJEB81327 43793 255 1.082418 2.7601659 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 311 3.46e-80   NTclustered gi|575456455|gb|CP007128.1| 861299 g43185 i0 88.627 94.9176470588235 255 29 100 0 1 255 4457727 4457981 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 24204 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
16299567 16299567 PRJEB81327_P_NODE_24593_length_288_cov_1.432558_g23985_i0 PRJEB81327 24593 288 1.432558 4.12576704 Longimicrobium sp. 2029185 Bacteria Bacteria 101 5.22e-24   NR HEX8673236.1 2029185 g23985 i0 90.9 2.29166666666667 55 5 57.3 0 1 165 197 251 HEX8673236.1 HrcA family transcriptional regulator [Longimicrobium sp.] diamond 660 101 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
17991351 17991351 PRJEB81327_P_NODE_33415_length_272_cov_1.547739_g32807_i0 PRJEB81327 33415 272 1.547739 4.20985008 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 193 1.41e-44   NTclustered gi|575461033|gb|CP007129.1| 861299 g32807 i0 82.096 0.841911764705882 229 38 84 3 1 228 598802 599028 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence blastn 229 193 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
17991729 17991729 PRJEB81327_P_NODE_63835_length_241_cov_4.809524_g63227_i0 PRJEB81327 63835 241 4.809524 11.59095284 Gemmatirosa sp. 2510638 Bacteria Bacteria 116 1.47e-30   NR HEY0780523.1 2510638 g63227 i0 82.1 1.95435684647303 78 14 97.1 0 2 235 35 112 HEY0780523.1 DUF979 family protein [Gemmatirosa sp.] diamond 471 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
21816684 21816684 PRJEB81327_P_NODE_44738_length_253_cov_1.711111_g44130_i0 PRJEB81327 44738 253 1.711111 4.32911083 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 150 7.91e-32   NTclustered gi|2874253995|emb|OY970320.1| 246130 g44130 i0 84.768 28.5928853754941 151 21 59 2 2 151 1272128 1271979 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 7234 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
28739678 28739678 PRJEB81327_P_NODE_60067_length_244_cov_0.900585_g59459_i0 PRJEB81327 60067 244 0.900585 2.1974274 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.4 0.0453   NR MEX2526726.1 2026742 g59459 i0 35 0.983606557377049 80 51 97.1 1 6 242 142 221 MEX2526726.1 hypothetical protein [Gemmatimonadota bacterium] diamond 240 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29813067 29813067 PRJEB81327_P_NODE_64991_length_241_cov_0.916667_g64383_i0 PRJEB81327 64991 241 0.916667 2.20916747 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 50.8 5.15e-5   NR HWJ14826.1 2026741 g64383 i0 62.8 1.13278008298755 43 14 51 1 106 228 4 46 HWJ14826.1 alpha-glucuronidase family glycosyl hydrolase [Gemmatimonadaceae bacterium] diamond 273 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29869056 29869056 PRJEB81327_P_NODE_45491_length_252_cov_1.363128_g44883_i0 PRJEB81327 45491 252 1.363128 3.43508256 Gemmatimonas 173479 Bacteria Bacteria 42.7 0.0405   NR WP_337171994.1 173480 g44883 i0 40.3 1.21428571428571 62 34 73.8 1 24 209 327 385 WP_337171994.1 cytochrome b N-terminal domain-containing protein [Gemmatimonas aurantiaca] diamond 306 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
30508222 30508222 PRJEB81327_P_NODE_51833_length_248_cov_0.880000_g51225_i0 PRJEB81327 51833 248 0.88 2.1824 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 50.8 3.75e-5   NR MBT5145793.1 2026742 g51225 i0 47.9 1.16129032258065 48 25 58.1 0 4 147 88 135 MBT5145793.1 pentapeptide repeat-containing protein [Gemmatimonadota bacterium] diamond 288 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30974966 30974966 PRJEB81327_P_NODE_62294_length_242_cov_1.822485_g61686_i0 PRJEB81327 62294 242 1.822485 4.4104137 Gemmatimonas 173479 Bacteria Bacteria 150 3.629999999999999e-42   NR WP_396204666.1 1962908 g61686 i0 86.3 4.95867768595041 80 11 99.2 0 241 2 26 105 WP_396204666.1 NAD-dependent epimerase/dehydratase family protein [Gemmatimonas sp.] diamond 1200 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
31045675 31045675 PRJEB81327_P_NODE_54155_length_247_cov_0.885057_g53547_i0 PRJEB81327 54155 247 0.885057 2.18609079 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 138 3.64e-39   NR HWO88676.1 2448054 g53547 i0 88.8 0.97165991902834 80 9 97.2 0 1 240 125 204 HWO88676.1 response regulator transcription factor [Gemmatimonadales bacterium] diamond 240 138 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31361605 31361605 PRJEB81327_P_NODE_52496_length_248_cov_0.880000_g51888_i0 PRJEB81327 52496 248 0.88 2.1824 Longimicrobium sp. 2029185 Bacteria Bacteria 128 7.120000000000001e-33   NR HEX8430016.1 2029185 g51888 i0 72 1.98387096774194 82 23 99.2 0 2 247 162 243 HEX8430016.1 hypothetical protein [Longimicrobium sp.] diamond 492 128 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31361606 31361606 PRJEB81327_P_NODE_53796_length_247_cov_0.885057_g53188_i0 PRJEB81327 53796 247 0.885057 2.18609079 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 84 1.18e-16   NR MBV9774374.1 2026742 g53188 i0 78.2 2.07692307692308 55 12 66.8 0 82 246 4 58 MBV9774374.1 FAD-dependent oxidoreductase [Gemmatimonadota bacterium] diamond 513 84 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31899200 31899200 PRJEB81327_P_NODE_63577_length_242_cov_0.911243_g62969_i0 PRJEB81327 63577 242 0.911243 2.20520806 Longimicrobium sp. 2029185 Bacteria Bacteria 126 1.47e-32   NR WP_329685498.1 2029185 g62969 i0 77.5 1.98347107438017 80 18 99.2 0 3 242 33 112 WP_329685498.1 low temperature requirement protein A [Longimicrobium sp.] diamond 480 126 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31994087 31994087 PRJEB81327_P_NODE_25518_length_286_cov_2.577465_g24910_i0 PRJEB81327 25518 286 2.577465 7.3715499 Longimicrobiales bacterium 2910168 Bacteria Bacteria 185 7.089999999999999e-55   NR HSJ10138.1 2910168 g24910 i0 86.3 1.99300699300699 95 13 99.7 0 285 1 189 283 HSJ10138.1 serine hydrolase [Longimicrobiales bacterium] diamond 570 185 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
32120802 32120802 PRJEB81327_P_NODE_65478_length_241_cov_0.916667_g64870_i0 PRJEB81327 65478 241 0.916667 2.20916747 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 106 1.49e-24   NR HXG72790.1 2026741 g64870 i0 57 0.983402489626556 79 34 98.3 0 237 1 99 177 HXG72790.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 237 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;