RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB81327", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJEB81327 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5242138 5242138 PRJEB81327_P_NODE_10985_length_411_cov_1.571006_g10377_i0 PRJEB81327 10985 411 1.571006 6.45683466 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 113 1.79e-20   NTclustered gi|511487963|gb|JX898537.1| 1260765 g10377 i0 88.298 11.6715328467153 94 11 23 0 29 122 362 269 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 4797 113 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
9067096 9067096 PRJEB81327_P_NODE_33068_length_273_cov_1.310000_g32460_i0 PRJEB81327 33068 273 1.31 3.5763 Tubulinea group 04 sp. MSED2 1215997 Tubulinea other_Eukaryota 494 3.46e-135   NTclustered gi|399764277|gb|JQ271788.1| 1215997 g32460 i0 99.267 51.5054945054945 273 2 100 0 1 273 537 809 Tubulinea group 04 sp. MSED2 18S ribosomal RNA gene, partial sequence blastn 14061 494 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. MSED2
9067556 9067556 PRJEB81327_P_NODE_7868_length_499_cov_1.725352_g7262_i0 PRJEB81327 7868 499 1.725352 8.60950648 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 168 7.12e-49   NR AAY21191.1 5778 g7262 i0 63.8 0.829659318637275 138 50 83 0 3 416 109 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 414 168 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32025799 32025799 PRJEB81327_P_NODE_62978_length_242_cov_0.911243_g62370_i0 PRJEB81327 62978 242 0.911243 2.20520806 Amoeba proteus 5775 Tubulinea other_Eukaryota 130 2.51e-35   NR AKN09692.1 5775 g62370 i0 87 0.954545454545455 77 10 95.5 0 6 236 97 173 AKN09692.1 Tom40 [Amoeba proteus] diamond 231 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;