RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB81171", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB81171 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20540298 20540298 PRJEB81171_P_NODE_3177_length_370_cov_1.868687_g3050_i0 PRJEB81171 3177 370 1.868687 6.9141419 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 126 9.049999999999999e-35   NR EJK75259.1 159749 g3050 i0 65.6 0.72972972972973 90 31 73 0 97 366 9 98 EJK75259.1 hypothetical protein THAOC_03022 [Thalassiosira oceanica] diamond 270 126 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
26812775 26812775 PRJEB81171_P_NODE_8681_length_248_cov_0.891429_g8554_i0 PRJEB81171 8681 248 0.891429 2.21074392 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 98.6 4.02e-22   NR VEU44542.1 183589 g8554 i0 52.4 1.01612903225806 84 37 98 1 246 4 237 320 VEU44542.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 252 98.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
30721953 30721953 PRJEB81171_P_NODE_2334_length_435_cov_1.077348_g2208_i0 PRJEB81171 2334 435 1.077348 4.6864638 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.026   NR KAI2512930.1 210448 g2208 i0 57.5 0.758620689655172 40 16 26.9 1 430 314 8 47 KAI2512930.1 hypothetical protein MHU86_1476 [Fragilaria crotonensis] diamond 330 45.4 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;