RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB81171", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB81171 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
139411 139411 PRJEB81171_P_NODE_6061_length_278_cov_1.258537_g5934_i0 PRJEB81171 6061 278 1.258537 3.49873286 Opitutaceae bacterium 2006848 Bacteria Bacteria 158 7.36e-46   NR MDD2765758.1 2006848 g5934 i0 83.5 0.982014388489209 91 15 98.2 0 274 2 127 217 MDD2765758.1 MaoC/PaaZ C-terminal domain-containing protein [Opitutaceae bacterium] diamond 273 158 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
6099801 6099801 PRJEB81171_P_NODE_6805_length_266_cov_1.404145_g6678_i0 PRJEB81171 6805 266 1.404145 3.7350257 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 77 4.38e-14   NR MBM3861047.1 2026799 g6678 i0 50 0.992481203007519 88 42 97 1 260 3 835 922 MBM3861047.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 264 77 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31899185 31899185 PRJEB81171_P_NODE_7897_length_252_cov_0.871508_g7770_i0 PRJEB81171 7897 252 0.871508 2.19620016 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 48.9 2.41e-4   NR MDF1813063.1 2026801 g7770 i0 36.3 2.08333333333333 91 40 100 3 252 1 65 144 MDF1813063.1 carbonic anhydrase family protein [Verrucomicrobiales bacterium] diamond 525 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32721086 32721086 PRJEB81171_P_NODE_7200_length_260_cov_1.117647_g7073_i0 PRJEB81171 7200 260 1.117647 2.9058822 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.0325   NR MEI6341235.1 2026799 g7073 i0 39.7 0.669230769230769 58 33 64.6 1 208 41 109 166 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 174 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;