RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJEB80557" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB80557 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
139219 139219 PRJEB80557_S_NODE_7521_length_325_cov_4.387681_g7125_i0 PRJEB80557 7521 325 4.387681 14.25996325 Tegillarca granosa 220873 Mollusca Mollusca 54.7 0.008   NTclustered gi|451805751|gb|KC355397.1| 220873 g7125 i0 94.286 0.107692307692308 35 2 11 0 290 324 804 770 Tegillarca granosa clone isotig2184 microsatellite sequence blastn 35 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Tegillarca Tegillarca granosa
2271669 2271669 PRJEB80557_S_NODE_26222_length_188_cov_2.215827_g25826_i0 PRJEB80557 26222 188 2.215827 4.16575476 Metazoa 33208 Mollusca Mollusca 52.8 0.016   NTclustered gi|2427390617|ref|XM_052917999.1| 6604 g25826 i0 100 2.34042553191489 28 0 15 0 75 102 5126 5153 PREDICTED: Mya arenaria protein mono-ADP-ribosyltransferase PARP14-like (LOC128212513), mRNA blastn 440 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
13750018 13750018 PRJEB80557_S_NODE_36171_length_163_cov_4.482456_g35775_i0 PRJEB80557 36171 163 4.482456 7.30640328 Metazoa 33208 Mollusca Mollusca 54.7 0.004   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g35775 i0 100 0.699386503067485 29 0 18 0 1 29 24192620 24192592 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 114 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
14167519 14167519 PRJEB80557_S_NODE_25852_length_189_cov_4.778571_g25456_i0 PRJEB80557 25852 189 4.778571 9.03149919 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.016   NTclustered gi|2912981848|dbj|AP039587.1| 145626 g25456 i0 100 0.148148148148148 28 0 15 0 162 189 39830684 39830657 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 6, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15441655 15441655 PRJEB80557_S_NODE_34393_length_166_cov_3.299145_g33997_i0 PRJEB80557 34393 166 3.299145 5.4765807 Biomphalaria glabrata 6526 Mollusca Mollusca 56.5 0.001   NTclustered gi|2502134919|ref|XM_056013775.1| 6526 g33997 i0 96.97 0.795180722891566 33 1 20 0 73 105 264 232 PREDICTED: Biomphalaria glabrata guanine nucleotide-binding protein-like 3 homolog (LOC106077405), transcript variant X5, mRNA blastn 132 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
16299293 16299293 PRJEB80557_S_NODE_6373_length_348_cov_4.688963_g5977_i0 PRJEB80557 6373 348 4.688963 16.31759124 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 71.3 9.1e-8   NTclustered gi|1523729924|gb|MG878440.1| 1541962 g5977 i0 92 0.295977011494253 50 4 14 0 121 170 50 1 Neomenia carinata 28S ribosomal RNA gene, partial sequence blastn 103 71.3 1 Eukaryota Opisthokonta Metazoa Mollusca Solenogastres Neomeniamorpha Neomeniidae Neomenia Neomenia carinata
16715769 16715769 PRJEB80557_S_NODE_19534_length_215_cov_0.927711_g19138_i0 PRJEB80557 19534 215 0.927711 1.99457865 Saccostrea cuccullata 36930 Mollusca Mollusca 93.5 1.12e-14   NTclustered gi|2669119258|ref|XR_009989263.1| 36930 g19138 i0 98.113 22.1581395348837 53 1 25 0 1 53 2401 2349 PREDICTED: Saccostrea cucullata large subunit ribosomal RNA (LOC134254150), rRNA blastn 4764 93.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata
19264550 19264550 PRJEB80557_S_NODE_16176_length_233_cov_3.907609_g15780_i0 PRJEB80557 16176 233 3.907609 9.10472897 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g15780 i0 97.059 0.145922746781116 34 0 14 1 105 137 10695198 10695165 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
29560383 29560383 PRJEB80557_S_NODE_25870_length_189_cov_3.028571_g25474_i0 PRJEB80557 25870 189 3.028571 5.72399919 Mytilus edulis 6550 Mollusca Mollusca 43.9 0.0068   NR CAG2187267.1 6550 g25474 i0 47.7 0.698412698412698 44 22 68.3 1 60 188 192 235 CAG2187267.1 unnamed protein product [Mytilus edulis] diamond 132 43.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;