RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB80557" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB80557 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2689173 2689173 PRJEB80557_S_NODE_25183_length_192_cov_1.090909_g24787_i0 PRJEB80557 25183 192 1.090909 2.09454528 Ignavibacteria bacterium 2053306 Bacteria Bacteria 103 7.1e-24   NR HED37809.1 2053306 g24787 i0 74.6 0.984375 63 16 98.4 0 2 190 1319 1381 HED37809.1 hypothetical protein [Ignavibacteria bacterium] diamond 189 103 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28360599 28360599 PRJEB80557_S_NODE_2866_length_474_cov_2.127059_g2472_i0 PRJEB80557 2866 474 2.127059 10.08225966 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 176 1.1799999999999999e-48   NR HOP49185.1 2049428 g2472 i0 96.7 0.575949367088608 91 3 57.6 0 10 282 517 607 HOP49185.1 adenylate/guanylate cyclase domain-containing protein [Ignavibacteriales bacterium] diamond 273 176 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
30666094 30666094 PRJEB80557_S_NODE_23753_length_196_cov_2.265306_g23357_i0 PRJEB80557 23753 196 2.265306 4.43999976 Ignavibacterium sp. 2651167 Bacteria Bacteria 89 6.45e-19   NR MCZ7609214.1 2651167 g23357 i0 61.5 4.95918367346939 65 25 99.5 0 1 195 266 330 MCZ7609214.1 site-specific DNA-methyltransferase [Ignavibacterium sp.] diamond 972 89 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;