RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB80557", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB80557 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23091212 23091212 PRJEB80557_S_NODE_6359_length_349_cov_1.763333_g5963_i0 PRJEB80557 6359 349 1.763333 6.15403217 PVC group 1783257 Bacteria Bacteria 85.1 1.65e-17   NR MDR1190930.1 2026801 g5963 i0 50.5 3.30945558739255 95 47 81.7 0 11 295 28 122 MDR1190930.1 response regulator [Verrucomicrobiales bacterium] diamond 1155 85.9 0.990686845168801 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28139970 28139970 PRJEB80557_S_NODE_29065_length_179_cov_2.176923_g28669_i0 PRJEB80557 29065 179 2.176923 3.89669217 Akkermansia sp. 1872421 Bacteria Bacteria 93.2 2.35e-20   NR WP_290549583.1 1872421 g28669 i0 70.7 2.91620111731844 58 17 97.2 0 178 5 336 393 WP_290549583.1 hypothetical protein [Akkermansia sp.] diamond 522 93.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
30128727 30128727 PRJEB80557_S_NODE_5092_length_382_cov_2.021021_g4696_i0 PRJEB80557 5092 382 2.021021 7.72030022 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 42.7 0.0487   NR HXT83015.1 2499141 g4696 i0 46.7 0.353403141361257 45 23 35.3 1 39 173 10 53 HXT83015.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 135 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;