RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB80557", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB80557 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13749901 13749901 PRJEB80557_S_NODE_15491_length_238_cov_1.915344_g15095_i0 PRJEB80557 15491 238 1.915344 4.55851872 Candidatus Rhabdochlamydia 292833 Bacteria Bacteria 174 4.37e-39   NTclustered gi|2082223669|gb|CP075585.1| 225148 g15095 i0 81.304 87.0042016806723 230 30 94 13 1 223 1019902 1019679 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 20707 174 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
30248368 30248368 PRJEB80557_S_NODE_14772_length_243_cov_3.376289_g14376_i0 PRJEB80557 14772 243 3.376289 8.20438227 Simkania 34093 Bacteria Bacteria 86.7 1.34e-17   NR MBS3905301.1 34094 g14376 i0 53.1 2 81 36 98.8 2 4 243 643 722 MBS3905301.1 hypothetical protein [Simkania sp.] diamond 486 86.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
32215644 32215644 PRJEB80557_S_NODE_4098_length_414_cov_2.413699_g3702_i0 PRJEB80557 4098 414 2.413699 9.99271386 Chlamydiota bacterium 2081524 Bacteria Bacteria 84 3.67e-16   NR MES2198641.1 2081524 g3702 i0 78.6 0.405797101449275 56 12 40.6 0 413 246 256 311 MES2198641.1 metal ABC transporter permease [Chlamydiota bacterium] diamond 168 84 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;