RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB80557", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB80557 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21815865 21815865 PRJEB80557_S_NODE_29258_length_179_cov_1.192308_g28862_i0 PRJEB80557 29258 179 1.192308 2.13423132 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 171 4.01e-38   NTclustered gi|575456455|gb|CP007128.1| 861299 g28862 i0 84.27 356.86592178771 178 24 99 4 1 177 3042646 3042472 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 63879 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
31804104 31804104 PRJEB80557_S_NODE_11137_length_275_cov_2.008850_g10741_i0 PRJEB80557 11137 275 2.00885 5.5243375 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 76.3 2.76e-15   NR HET6578856.1 2448054 g10741 i0 72.2 1.74545454545455 54 15 58.9 0 26 187 87 140 HET6578856.1 hypothetical protein [Gemmatimonadales bacterium] diamond 480 76.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;