RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJEB80557", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 5 ✖

tax_clade 1

  • Bacteria candidate phyla · 5 ✖

bioproject 1

  • PRJEB80557 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3965165 3965165 PRJEB80557_S_NODE_14324_length_247_cov_1.414141_g13928_i0 PRJEB80557 14324 247 1.414141 3.49292827 Candidatus Nanosynbacter sp. HMT-348_TM7c-JB 2933970 Bacteria Bacteria 418 1.9099999999999998e-112   NTclustered gi|2179907571|gb|CP090820.1| 2933970 g13928 i0 97.166 1 247 7 100 0 1 247 330752 330998 MAG: Candidatus Nanosynbacter sp. HMT-348_TM7c-JB isolate JCVI_32_bin.19 chromosome, complete genome blastn 247 418 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-348_TM7c-JB
26932060 26932060 PRJEB80557_S_NODE_12082_length_266_cov_0.926267_g11686_i0 PRJEB80557 12082 266 0.926267 2.46387022 Bacteria 2 Bacteria Bacteria 75.9 1.07e-13   NR HRF28207.1 2026720 g11686 i0 90.7 11.6390977443609 43 4 48.5 0 264 136 335 377 HRF28207.1 ATP-dependent zinc metalloprotease FtsH [Candidatus Saccharibacteria bacterium] diamond 3096 75.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27318853 27318853 PRJEB80557_S_NODE_10503_length_283_cov_1.435897_g10107_i0 PRJEB80557 10503 283 1.435897 4.06358851 Candidatus Saccharimonadaceae bacterium 2830836 Bacteria Bacteria 151 6.16e-42   NR MDD3035446.1 2830836 g10107 i0 81.9 1.99293286219081 94 17 99.6 0 283 2 238 331 MDD3035446.1 cysteine desulfurase NifS [Candidatus Saccharimonadaceae bacterium] diamond 564 151 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae   Candidatus Saccharimonadaceae bacterium
30097328 30097328 PRJEB80557_S_NODE_19452_length_215_cov_1.566265_g19056_i0 PRJEB80557 19452 215 1.566265 3.36746975 Candidatus Saccharibacteria bacterium 2026720 Bacteria Bacteria 52.4 9.52e-6   NR TAH35462.1 2026720 g19056 i0 54.3 0.641860465116279 46 21 64.2 0 5 142 262 307 TAH35462.1 MAG: methionyl-tRNA formyltransferase [Candidatus Saccharibacteria bacterium] diamond 138 52.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31139713 31139713 PRJEB80557_S_NODE_5515_length_370_cov_1.856698_g5119_i0 PRJEB80557 5515 370 1.856698 6.8697826 Candidatus Saccharibacteria bacterium 32-5 1970481 Bacteria Bacteria 199 1.2999999999999999e-58   NR OYX53357.1 1970481 g5119 i0 83.3 0.972972972972973 120 20 97.3 0 368 9 413 532 OYX53357.1 MAG: hypothetical protein B7Y92_03170 [Candidatus Saccharibacteria bacterium 32-50-13] diamond 360 199 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 32-50-13

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;