RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB7799" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB7799 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25934168 25934168 PRJEB7799a_S_NODE_15028_length_164_cov_2.604651_g14993_i0 PRJEB7799 15028 164 2.604651 4.27162764 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 213 5.94e-51   NTclustered gi|2874253811|emb|OY969795.1| 464461 g14993 i0 89.881 138.908536585366 168 13 100 3 1 164 655402 655235 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 22781 213 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
26297262 26297262 PRJEB7799l_S_NODE_4030_length_232_cov_2.609137_g4001_i0 PRJEB7799 4030 232 2.609137 6.05319784 Candidatus Syngnamydia 1803801 Bacteria Bacteria 401 1.7899999999999994e-107   NTclustered gi|2041293252|gb|CP073763.1| 2698248 g4001 i0 97.845 134.314655172414 232 5 100 0 1 232 6634 6403 MAG: Simkaniaceae bacterium isolate M30B1 chromosome, complete genome blastn 31161 401 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
33033149 33033149 PRJEB7799n_S_NODE_2212_length_288_cov_16.470356_g2175_i0 PRJEB7799 2212 288 16.470356 47.43462528 Chlamydiales bacterium 2047757 Bacteria Bacteria 85.5 1.22e-18   NR MCP5470420.1 2047757 g2175 i0 73.3 0.78125 75 20 78.1 0 282 58 81 155 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 225 85.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;