RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJEB7799" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7799 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25799293 25799293 PRJEB7799g_S_NODE_17035_length_155_cov_1.150000_g16819_i0 PRJEB7799 17035 155 1.15 1.7825 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 250 4.21e-62   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g16819 i0 100 82.6129032258064 135 0 87 0 1 135 1293188 1293322 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 12805 250 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
26071783 26071783 PRJEB7799i_S_NODE_8085_length_173_cov_2.376812_g8055_i0 PRJEB7799 8085 173 2.376812 4.11188476 Micavibrio aeruginosavorus ARL-13 856793 Bacteria Bacteria 148 1.7999999999999998e-31   NTclustered gi|347589306|gb|CP002382.1| 856793 g8055 i0 82.081 4.32947976878613 173 31 100 0 1 173 878515 878687 Micavibrio aeruginosavorus ARL-13, complete genome blastn 749 148 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
26072769 26072769 PRJEB7799n_S_NODE_6597_length_188_cov_5.065359_g6560_i0 PRJEB7799 6597 188 5.065359 9.52287492 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 97.8 3.5599999999999995e-24   NR MCB0369869.1 2053517 g6560 i0 88.9 1.72340425531915 54 6 86.2 0 188 27 94 147 MCB0369869.1 uL15 family ribosomal protein [Bdellovibrionales bacterium] diamond 324 97.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26297366 26297366 PRJEB7799m_S_NODE_318_length_285_cov_2.948000_g313_i0 PRJEB7799 318 285 2.948 8.4018 Bacteriovorax 146784 Bacteria Bacteria 252 2.42e-62   NTclustered gi|1700689994|gb|CP030035.1| 960 g313 i0 82.927 242.168421052632 287 42 99 7 2 285 1660692 1660410 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 69018 252 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
26297420 26297420 PRJEB7799n_S_NODE_3430_length_243_cov_4.750000_g3393_i0 PRJEB7799 3430 243 4.75 11.5425 Bacteriovorax 146784 Bacteria Bacteria 211 3.41e-50   NTclustered gi|1700689994|gb|CP030035.1| 960 g3393 i0 82.787 281.522633744856 244 35 100 7 1 240 1660427 1660667 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 68410 211 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
26480222 26480222 PRJEB7799i_S_NODE_9784_length_160_cov_3.720000_g9754_i0 PRJEB7799 9784 160 3.72 5.952 Bdellovibrio sp. HCB117 3394359 Bacteria Bacteria 54.7 0.004   NTclustered gi|2895987660|gb|CP178622.1| 3394359 g9754 i0 100 0.18125 29 0 18 0 99 127 2938422 2938450 Bdellovibrio sp. HCB117 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB117
32913525 32913525 PRJEB7799n_S_NODE_6065_length_194_cov_3.283019_g6028_i0 PRJEB7799 6065 194 3.283019 6.36905686 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 76.6 2.27e-16   NR MCB0370427.1 2053517 g6028 i0 62.7 2.33505154639175 51 19 78.9 0 2 154 47 97 MCB0370427.1 co-chaperone GroES [Bdellovibrionales bacterium] diamond 453 76.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32982083 32982083 PRJEB7799n_S_NODE_2555_length_271_cov_11.000000_g2518_i0 PRJEB7799 2555 271 11 29.81 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 71.2 1.42e-13   NR MCB0370576.1 2053517 g2518 i0 59.4 0.708487084870849 64 26 70.8 0 261 70 54 117 MCB0370576.1 hypothetical protein [Bdellovibrionales bacterium] diamond 192 71.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32998946 32998946 PRJEB7799n_S_NODE_2027_length_299_cov_25.488636_g1990_i0 PRJEB7799 2027 299 25.488636 76.21102164 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 90.9 7.240000000000001e-21   NR MCB0368309.1 2053517 g1990 i0 70.4 0.712374581939799 71 21 71.2 0 297 85 72 142 MCB0368309.1 hypothetical protein [Bdellovibrionales bacterium] diamond 213 90.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;