RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB7799", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJEB7799 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25528326 25528326 PRJEB7799n_S_NODE_1969_length_303_cov_168.664179_g1932_i0 PRJEB7799 1969 303 168.664179 511.05246237 Helicobacter pylori 210 Bacteria Bacteria 69.4 2.8e-7   NTclustered gi|2222028449|gb|CP094103.1| 210 g1932 i0 95.349 12.5478547854785 43 2 14 0 1 43 1292615 1292573 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 3802 69.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
25798460 25798460 PRJEB7799a_S_NODE_7243_length_201_cov_3.409639_g7208_i0 PRJEB7799 7243 201 3.409639 6.85337439 Pseudomonadati 3379134 Bacteria Bacteria 142 1.2e-42   NR WP_233482492.1 195 g7208 i0 100 2.95522388059702 66 0 98.5 0 199 2 2 67 WP_233482492.1 winged helix-turn-helix domain-containing protein, partial [Campylobacter coli] diamond 594 142 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
25935356 25935356 PRJEB7799f_S_NODE_1484_length_219_cov_4.891304_g1468_i0 PRJEB7799 1484 219 4.891304 10.71195576 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 63.9 8.95e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g1468 i0 90 0.684931506849315 50 3 22 2 166 213 1151782 1151733 Campylobacter sp. 19-13652 DNA, complete genome blastn 150 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652
26344538 26344538 PRJEB7799l_S_NODE_8911_length_176_cov_10.276596_g8882_i0 PRJEB7799 8911 176 10.276596 18.08680896 Pseudomonadati 3379134 Bacteria Bacteria 93.6 3.05e-21   NR MDD3603551.1 1969726 g8882 i0 100 1.60227272727273 47 0 80.1 0 174 34 61 107 MDD3603551.1 CaiB/BaiF CoA-transferase family protein [Sulfurovum sp.] diamond 282 93.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp.
26344686 26344686 PRJEB7799n_S_NODE_1903_length_309_cov_2.697080_g1866_i0 PRJEB7799 1903 309 2.69708 8.3339772 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 65.8 3.71e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g1866 i0 82.667 0.728155339805825 75 11 24 2 89 161 1151708 1151782 Campylobacter sp. 19-13652 DNA, complete genome blastn 225 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652
32930514 32930514 PRJEB7799l_S_NODE_7841_length_184_cov_2.161074_g7812_i0 PRJEB7799 7841 184 2.161074 3.97637616 Sulfurovum sp. 1969726 Bacteria Bacteria 72.4 5.16e-13   NR WP_309497906.1 1969726 g7812 i0 92.3 2.47826086956522 39 3 63.6 0 117 1 1 39 WP_309497906.1 bifunctional 2-methylcitrate synthase/citrate synthase [Sulfurovum sp.] diamond 456 72.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp.
32974673 32974673 PRJEB7799c_S_NODE_8810_length_178_cov_4.426573_g8787_i0 PRJEB7799 8810 178 4.426573 7.87929994 Pseudomonadati 3379134 Bacteria Bacteria 52 1.71e-6   NR TXH50358.1 2482794 g8787 i0 85.7 0.943820224719101 28 4 47.2 0 85 2 1 28 TXH50358.1 MAG: exodeoxyribonuclease V subunit gamma, partial [Desulfurellales bacterium] diamond 168 52 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;