RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB7799", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 6 ✖

bioproject 1

  • PRJEB7799 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25528950 25528950 PRJEB7799p_S_NODE_21849_length_160_cov_1.736000_g21826_i0 PRJEB7799 21849 160 1.736 2.7776 Human immunodeficiency virus 1 11676 Viruses Viruses 279 5.59e-71   NTclustered gi|4205042|gb|U69590.1|HIVU69590 11676 g21826 i0 98.125 99.73125 160 3 100 0 1 160 1325 1484 HIV-1 patient WCIPR sample 1990 clone 12, complete genome blastn 15957 279 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25665320 25665320 PRJEB7799p_S_NODE_7458_length_207_cov_1.436047_g7435_i0 PRJEB7799 7458 207 1.436047 2.97261729 Human immunodeficiency virus 1 11676 Viruses Viruses 357 3.43e-94   NTclustered gi|170778589|gb|EU517765.1| 11676 g7435 i0 97.585 99.719806763285 207 5 100 0 1 207 1160 1366 HIV-1 isolate BEC1 from USA gag protein (gag) gene, complete cds blastn 20642 357 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25753582 25753582 PRJEB7799p_S_NODE_1218_length_374_cov_3573.407080_g1195_i0 PRJEB7799 1218 374 3573.40708 13364.5424792 root 1 Root_unresolved Root_unresolved 128 5.75e-25   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g1195 i0 98.63 19.3930481283422 73 0 20 1 23 95 9539 9468 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 7253 128 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26073721 26073721 PRJEB7799p_S_NODE_9917_length_193_cov_1.822785_g9894_i0 PRJEB7799 9917 193 1.822785 3.51797505 Human immunodeficiency virus 1 11676 Viruses Viruses 324 3.19e-84   NTclustered gi|294860966|gb|GU390494.1| 11676 g9894 i0 96.891 99.9119170984456 193 6 100 0 1 193 1026 834 HIV-1 isolate AC_GAG31 from USA gag protein (gag) gene, complete cds blastn 19283 324 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26161708 26161708 PRJEB7799p_S_NODE_1013_length_394_cov_4216.203343_g990_i0 PRJEB7799 1013 394 4216.203343 16611.84117142 root 1 Root_unresolved Root_unresolved 128 6.09e-25   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g990 i0 98.63 17.7766497461929 73 0 19 1 300 372 9468 9539 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 7004 128 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26481617 26481617 PRJEB7799p_S_NODE_2120_length_314_cov_3357.562724_g2097_i0 PRJEB7799 2120 314 3357.562724 10542.74695336 Human immunodeficiency virus 1 11676 Viruses Viruses 119 2.86e-22   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g2097 i0 97.143 22.2420382165605 70 2 22 0 245 314 9466 9535 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 6984 119 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;