RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB7799", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJEB7799 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26072360 26072360 PRJEB7799l_S_NODE_701_length_441_cov_96.800493_g672_i0 PRJEB7799 701 441 96.800493 426.89017413 Dissulfurimicrobium hydrothermale 1750598 Bacteria Bacteria 300 1.3799999999999999e-76   NTclustered gi|2190143862|gb|CP085041.1| 1750598 g672 i0 81.675 244.281179138322 382 50 84 15 72 441 692168 691795 Dissulfurimicrobium hydrothermale strain Sh68 chromosome, complete genome blastn 107728 300 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria     Dissulfurimicrobium Dissulfurimicrobium hydrothermale
32930728 32930728 PRJEB7799n_S_NODE_7033_length_184_cov_4.214765_g6996_i0 PRJEB7799 7033 184 4.214765 7.7551676 uncultured delta proteobacterium HF 34034 Bacteria Bacteria 53.5 1.04e-6   NR ADI17622.1 710828 g6996 i0 59.6 0.766304347826087 47 19 76.6 0 183 43 16 62 ADI17622.1 hypothetical protein [uncultured delta proteobacterium HF0130_19C20] diamond 141 53.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0130_19C20

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;