RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB76780" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB76780 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2688906 2688906 PRJEB76780_P_NODE_9063_length_270_cov_1.187817_g8963_i0 PRJEB76780 9063 270 1.187817 3.2071059 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 455 1.6100000000000002e-123   NTclustered gi|421976335|gb|JQ519484.1| 5778 g8963 i0 97.037 86.9296296296296 270 8 100 0 1 270 13 282 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 23471 455 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22673353 22673353 PRJEB76780_P_NODE_5218_length_354_cov_2.839858_g5118_i0 PRJEB76780 5218 354 2.839858 10.05309732 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 1.16e-26   NTclustered gi|300078496|gb|GU001158.1| 5778 g5118 i0 89.623 25.8672316384181 106 10 30 1 246 351 987 883 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9157 135 0.992592592592593 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;