RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB76780", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJEB76780 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12892255 12892255 PRJEB76780_P_NODE_4671_length_376_cov_1.029703_g4571_i0 PRJEB76780 4671 376 1.029703 3.87168328 Pseudodesulfovibrio aespoeensis 182210 Bacteria Bacteria 230 1.5399999999999995e-55   NTclustered gi|316941978|gb|CP002431.1| 643562 g4571 i0 78.797 69.5718085106383 349 68 92 3 3 348 2475509 2475854 Pseudodesulfovibrio aespoeensis Aspo-2 chromosome, complete genome blastn 26159 230 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio aespoeensis
16715404 16715404 PRJEB76780_P_NODE_11134_length_250_cov_0.881356_g11034_i0 PRJEB76780 11134 250 0.881356 2.20339 Desulfuromonas sp. DDH964 1823759 Bacteria Bacteria 159 1.3e-34   NTclustered gi|1015516084|gb|CP015080.1| 1823759 g11034 i0 80.583 2.104 206 40 82 0 1 206 1372927 1373132 Desulfuromonas sp. DDH964 chromosome, complete genome blastn 526 159 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. DDH964
19264307 19264307 PRJEB76780_P_NODE_4716_length_374_cov_1.013289_g4616_i0 PRJEB76780 4716 374 1.013289 3.78970086 Desulfolithobacter dissulfuricans 2795293 Bacteria Bacteria 322 2.46e-83   NTclustered gi|2304357171|dbj|AP024233.1| 2795293 g4616 i0 83.242 426.213903743315 364 48 96 10 1 358 1926416 1926772 Desulfobulbaceae bacterium GF1 GF1 DNA, complete genome blastn 159404 322 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfolithobacter Desulfolithobacter dissulfuricans
27438064 27438064 PRJEB76780_P_NODE_7683_length_291_cov_2.096330_g7583_i0 PRJEB76780 7683 291 2.09633 6.1003203 root 1 Root_unresolved Root_unresolved 86.3 3.47e-17   NR RJP83704.1 2049433 g7583 i0 42 4.06185567010309 100 54 100 2 1 291 125 223 RJP83704.1 MAG: hypothetical protein C4522_00045 [Desulfobacteraceae bacterium] diamond 1182 86.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
28487090 28487090 PRJEB76780_P_NODE_13147_length_243_cov_0.917647_g13047_i0 PRJEB76780 13147 243 0.917647 2.22988221 Desulfohalobiaceae bacterium 2683721 Bacteria Bacteria 117 3.55e-29   NR MCF8030969.1 2683721 g13047 i0 69.1 1 81 24 98.8 1 3 242 111 191 MCF8030969.1 outer membrane homotrimeric porin [Desulfohalobiaceae bacterium] diamond 243 117 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae   Desulfohalobiaceae bacterium
29300697 29300697 PRJEB76780_P_NODE_12149_length_246_cov_1.335260_g12049_i0 PRJEB76780 12149 246 1.33526 3.2847396 Pseudomonadati 3379134 Bacteria Bacteria 59.7 4.17e-8   NR WP_035247523.1 160661 g12049 i0 41 2.52439024390244 78 46 95.1 0 5 238 1628 1705 WP_035247523.1 SBBP repeat-containing protein, partial [Desulfogranum mediterraneum] diamond 621 59.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfogranum Desulfogranum mediterraneum
30761021 30761021 PRJEB76780_P_NODE_12574_length_245_cov_0.906977_g12474_i0 PRJEB76780 12574 245 0.906977 2.22209365 Desulfobacterales bacterium 2044940 Bacteria Bacteria 169 3.73e-47   NR MBS3756811.1 2044940 g12474 i0 93.8 1.98367346938776 81 5 99.2 0 244 2 576 656 MBS3756811.1 molybdopterin-dependent oxidoreductase [Desulfobacterales bacterium] diamond 486 169 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32145054 32145054 PRJEB76780_P_NODE_6118_length_326_cov_1.845850_g6018_i0 PRJEB76780 6118 326 1.84585 6.017471 Pseudomonadati 3379134 Bacteria Bacteria 68.9 1.22e-12   NR MFO7665801.1 2044940 g6018 i0 57.6 2.73312883435583 59 23 54.3 1 318 142 39 95 MFO7665801.1 co-chaperone GroES [Desulfobacterales bacterium] diamond 891 68.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;