RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB76780" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJEB76780 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7791051 7791051 PRJEB76780_P_NODE_5967_length_331_cov_1.112403_g5867_i0 PRJEB76780 5967 331 1.112403 3.68205393 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 155 8.629999999999998e-42   NR MBD64553.1 2026745 g5867 i0 69.7 4.93051359516616 109 33 98.8 0 2 328 452 560 MBD64553.1 urocanate hydratase [Halobacteriovoraceae bacterium] diamond 1632 155 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
27128628 27128628 PRJEB76780_P_NODE_3742_length_422_cov_0.893983_g3642_i0 PRJEB76780 3742 422 0.893983 3.77260826 Silvanigrellales bacterium 2767476 Bacteria Bacteria 117 3.56e-28   NR MCA2961534.1 2767476 g3642 i0 51.7 0.853080568720379 120 50 83.2 4 420 70 146 260 MCA2961534.1 VCBS repeat-containing protein [Silvanigrellales bacterium] diamond 360 117 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales     Silvanigrellales bacterium
28360577 28360577 PRJEB76780_P_NODE_1746_length_628_cov_3.018018_g1649_i0 PRJEB76780 1746 628 3.018018 18.95315304 Oligoflexales bacterium 2687297 Bacteria Bacteria 94.4 2.31e-18   NR MFK7827240.1 2687297 g1649 i0 40.4 1.39490445859873 136 73 64 4 30 431 510 639 MFK7827240.1 hypothetical protein [Oligoflexales bacterium] diamond 876 94.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
28424008 28424008 PRJEB76780_P_NODE_9566_length_262_cov_2.201058_g9466_i0 PRJEB76780 9566 262 2.201058 5.76677196 Bdellovibrionales bacterium RBG_16_4 2053517 Bacteria Bacteria 124 1.2e-31   NR OFZ10838.1 1797388 g9466 i0 75.6 0.984732824427481 86 21 98.5 0 260 3 5 90 OFZ10838.1 MAG: hypothetical protein A2Z20_03765 [Bdellovibrionales bacterium RBG_16_40_8] diamond 258 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RBG_16_40_8
28455624 28455624 PRJEB76780_P_NODE_5146_length_357_cov_1.876761_g5046_i0 PRJEB76780 5146 357 1.876761 6.70003677 Bdellovibrio sp. CG22_combo_CG1 28201 Bacteria Bacteria 61.6 3.44e-8   NR PIP93190.1 1975529 g5046 i0 35.8 2.00840336134454 123 63 98.3 4 355 5 868 980 PIP93190.1 MAG: hypothetical protein COW78_16385 [Bdellovibrio sp. CG22_combo_CG10-13_8_21_14_all_39_27] diamond 717 61.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CG22_combo_CG10-13_8_21_14_all_39_27
29654835 29654835 PRJEB76780_P_NODE_11210_length_250_cov_0.881356_g11110_i0 PRJEB76780 11210 250 0.881356 2.20339 Peredibacter starrii 28202 Bacteria Bacteria 152 8.86e-41   NR WP_321393864.1 28202 g11110 i0 96.3 0.984 82 3 98.4 0 3 248 440 521 WP_321393864.1 ATP-dependent Clp protease ATP-binding subunit ClpA [Peredibacter starrii] diamond 246 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
31234744 31234744 PRJEB76780_P_NODE_315_length_1351_cov_1.449922_g270_i0 PRJEB76780 315 1351 1.449922 19.58844622 Oligoflexales bacterium 2687297 Bacteria Bacteria 131 1.13e-28   NR MFK7827240.1 2687297 g270 i0 36 0.506291635825315 228 119 48.4 8 1080 427 723 933 MFK7827240.1 hypothetical protein [Oligoflexales bacterium] diamond 684 131 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
31923428 31923428 PRJEB76780_P_NODE_9377_length_265_cov_1.625000_g9277_i0 PRJEB76780 9377 265 1.625 4.30625 Micavibrio 213485 Bacteria Bacteria 61.2 9.06e-9   NR PZP56489.1 349221 g9277 i0 70.7 0.950943396226415 41 12 46.4 0 252 130 211 251 PZP56489.1 MAG: hypothetical protein DI586_03610 [Micavibrio aeruginosavorus] diamond 252 61.6 0.993506493506494 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;