RNAquarium Metadata Server
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contig_metadata

37 rows where bioproject = "PRJEB76780", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 37 ✖

tax_kingdom 1

  • Pseudomonadati · 37 ✖

bioproject 1

  • PRJEB76780 · 37 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5241341 5241341 PRJEB76780_P_NODE_1645_length_646_cov_2.708551_g1548_i0 PRJEB76780 1645 646 2.708551 17.49723946 Myxococcaceae bacterium 2484252 Bacteria Bacteria 205 7.82e-58   NR MBX5481666.1 2484252 g1548 i0 48.8 3.92879256965944 209 104 95.7 1 625 8 221 429 MBX5481666.1 M4 family metallopeptidase [Myxococcaceae bacterium] diamond 2538 205 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
7373946 7373946 PRJEB76780_P_NODE_3186_length_457_cov_5.966146_g3086_i0 PRJEB76780 3186 457 5.966146 27.26528722 Myxococcus 32 Bacteria Bacteria 58.4 0.001   NTclustered gi|2869653495|gb|CP175551.1| 33 g3086 i0 94.595 0.242888402625821 37 2 8 0 47 83 7197677 7197641 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 111 58.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
26717249 26717249 PRJEB76780_P_NODE_2321_length_542_cov_3.471215_g2221_i0 PRJEB76780 2321 542 3.471215 18.8139853 Myxococcales bacterium 2026763 Bacteria Bacteria 80.9 1.25e-15   NR MBL9042354.1 2026763 g2221 i0 39.7 0.697416974169742 126 64 66.4 4 516 157 38 157 MBL9042354.1 profilin [Myxococcales bacterium] diamond 378 80.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27034206 27034206 PRJEB76780_P_NODE_2022_length_585_cov_1.828125_g1923_i0 PRJEB76780 2022 585 1.828125 10.69453125 Myxococcales bacterium 2026763 Bacteria Bacteria 50.1 8.92e-4   NR MBL8605538.1 2026763 g1923 i0 39.2 1.2974358974359 79 44 40 3 237 4 49 124 MBL8605538.1 hypothetical protein [Myxococcales bacterium] diamond 759 50.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27255423 27255423 PRJEB76780_P_NODE_9943_length_257_cov_1.500000_g9843_i0 PRJEB76780 9943 257 1.5 3.855 Polyangiales bacterium 3034171 Bacteria Bacteria 64.3 1.08e-9   NR MEZ4393950.1 3034171 g9843 i0 40.7 0.945525291828794 81 44 89.9 1 13 243 152 232 MEZ4393950.1 rhodanese-like domain-containing protein [Polyangiales bacterium] diamond 243 64.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27382015 27382015 PRJEB76780_P_NODE_10583_length_252_cov_0.871508_g10483_i0 PRJEB76780 10583 252 0.871508 2.19620016 Polyangiaceae bacterium 2268199 Bacteria Bacteria 150 3.54e-40   NR MBK6518243.1 2268199 g10483 i0 86.7 2.96428571428571 83 11 98.8 0 250 2 460 542 MBK6518243.1 DUF4388 domain-containing protein [Polyangiaceae bacterium] diamond 747 150 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27382020 27382020 PRJEB76780_P_NODE_343_length_1287_cov_1.600494_g298_i0 PRJEB76780 343 1287 1.600494 20.59835778 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 216 5.09e-58   NR MBI2898174.1 2026735 g298 i0 33.6 0.997668997668998 428 200 96 17 1274 39 617 976 MBI2898174.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1284 216 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27722374 27722374 PRJEB76780_P_NODE_3704_length_424_cov_1.327635_g3604_i0 PRJEB76780 3704 424 1.327635 5.6291724 Myxococcia 32015 Bacteria Bacteria 120 4.41e-29   NR MBK8266225.1 1962667 g3604 i0 59.3 2.09433962264151 91 37 64.4 0 5 277 345 435 MBK8266225.1 cytochrome P450 [Nannocystis sp.] diamond 888 120 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
27816884 27816884 PRJEB76780_P_NODE_11264_length_249_cov_2.647727_g11164_i0 PRJEB76780 11264 249 2.647727 6.59284023 Bacteria 2 Bacteria Bacteria 58.9 7.47e-8   NR WP_293275847.1 1962667 g11164 i0 60 2.46987951807229 40 16 48.2 0 220 101 305 344 WP_293275847.1 tectonin domain-containing protein [Nannocystis sp.] diamond 615 59.3 0.993254637436762 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
27950328 27950328 PRJEB76780_P_NODE_765_length_934_cov_2.392567_g689_i0 PRJEB76780 765 934 2.392567 22.34657578 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 51.2 0.00413   NR MBK8010220.1 2026735 g689 i0 38.3 0.19271948608137 60 36 19 1 585 409 10 69 MBK8010220.1 VCBS repeat-containing protein [Deltaproteobacteria bacterium] diamond 180 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28424001 28424001 PRJEB76780_P_NODE_5086_length_360_cov_1.087108_g4986_i0 PRJEB76780 5086 360 1.087108 3.9135888 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 46.2 0.00721   NR MBN1770438.1 2026735 g4986 i0 30.8 1 120 67 97.5 5 5 355 86 192 MBN1770438.1 endonuclease/exonuclease/phosphatase family protein [Deltaproteobacteria bacterium] diamond 360 46.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29087058 29087058 PRJEB76780_P_NODE_2028_length_584_cov_3.135029_g1929_i0 PRJEB76780 2028 584 3.135029 18.30856936 Myxococcaceae bacterium 2484252 Bacteria Bacteria 128 1.21e-30   NR HLL05385.1 2484252 g1929 i0 63.6 1.25856164383562 110 40 56.5 0 254 583 379 488 HLL05385.1 LysM peptidoglycan-binding domain-containing protein [Myxococcaceae bacterium] diamond 735 128 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29276227 29276227 PRJEB76780_P_NODE_11669_length_248_cov_0.891429_g11569_i0 PRJEB76780 11669 248 0.891429 2.21074392 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 74.7 1.53e-13   NR MBG56501.1 2026735 g11569 i0 52.8 7.51209677419355 72 31 87.1 1 226 11 8 76 MBG56501.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1863 74.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29458235 29458235 PRJEB76780_P_NODE_5990_length_330_cov_1.214008_g5890_i0 PRJEB76780 5990 330 1.214008 4.0062264 Bacteria 2 Bacteria Bacteria 119 1.86e-28   NR MBX3157515.1 2026735 g5890 i0 60.4 6.07272727272727 96 38 87.3 0 3 290 797 892 MBX3157515.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 2004 120 0.991666666666667 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29623164 29623164 PRJEB76780_P_NODE_4930_length_365_cov_1.962329_g4830_i0 PRJEB76780 4930 365 1.962329 7.16250085 Minicystis sp. 1971901 Bacteria Bacteria 55.8 2.38e-6   NR MFT3771840.1 1971901 g4830 i0 53.5 1.04383561643836 43 20 35.3 0 235 363 2 44 MFT3771840.1 T6SS effector amidase Tae4 family protein [Minicystis sp.] diamond 381 55.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis sp.
30319161 30319161 PRJEB76780_P_NODE_10412_length_253_cov_0.866667_g10312_i0 PRJEB76780 10412 253 0.866667 2.19266751 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 73.6 6.03e-13   NR MBI5544626.1 2026735 g10312 i0 66.1 0.66403162055336 56 13 66.4 1 17 184 620 669 MBI5544626.1 choice-of-anchor D domain-containing protein [Deltaproteobacteria bacterium] diamond 168 73.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30539729 30539729 PRJEB76780_P_NODE_3393_length_443_cov_0.891892_g3293_i0 PRJEB76780 3393 443 0.891892 3.95108156 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 73.9 4.29e-12   NR MCB9727208.1 2026735 g3293 i0 54.8 0.419864559819413 62 26 41.3 2 255 73 896 956 MCB9727208.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 186 73.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30602826 30602826 PRJEB76780_P_NODE_10673_length_252_cov_0.871508_g10573_i0 PRJEB76780 10673 252 0.871508 2.19620016 Polyangiaceae bacterium 2268199 Bacteria Bacteria 44.7 0.00718   NR HQP34061.1 2268199 g10573 i0 40.9 0.785714285714286 66 32 77.4 4 248 54 68 127 HQP34061.1 hypothetical protein [Polyangiaceae bacterium] diamond 198 44.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30666081 30666081 PRJEB76780_P_NODE_12553_length_245_cov_0.906977_g12453_i0 PRJEB76780 12553 245 0.906977 2.22209365 Myxococcales bacterium 2026763 Bacteria Bacteria 49.7 1.39e-4   NR MCA9689943.1 2026763 g12453 i0 38.3 0.991836734693878 81 48 99.2 1 2 244 66 144 MCA9689943.1 hypothetical protein [Myxococcales bacterium] diamond 243 49.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30697637 30697637 PRJEB76780_P_NODE_1794_length_620_cov_5.382084_g1697_i0 PRJEB76780 1794 620 5.382084 33.3689208 Byssovorax sp. 2927945 Bacteria Bacteria 65.1 2.56e-8   NR HEY4119975.1 2927945 g1697 i0 32.1 1.26774193548387 165 90 74.5 6 116 577 136 289 HEY4119975.1 hypothetical protein [Byssovorax sp.] diamond 786 65.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Byssovorax Byssovorax sp.
30729328 30729328 PRJEB76780_P_NODE_11614_length_248_cov_0.891429_g11514_i0 PRJEB76780 11614 248 0.891429 2.21074392 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 75.5 2.79e-15   NR MBI2394641.1 2026735 g11514 i0 71.7 0.641129032258065 53 15 64.1 0 161 3 1 53 MBI2394641.1 RidA family protein [Deltaproteobacteria bacterium] diamond 159 75.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30982271 30982271 PRJEB76780_P_NODE_3174_length_458_cov_2.192208_g3074_i0 PRJEB76780 3174 458 2.192208 10.04031264 Myxococcota bacterium 2818507 Bacteria Bacteria 94.7 1.54e-19   NR MEZ4269039.1 2818507 g3074 i0 49.2 0.864628820960699 132 65 86.5 2 433 38 254 383 MEZ4269039.1 hypothetical protein [Myxococcota bacterium] diamond 396 94.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31077040 31077040 PRJEB76780_P_NODE_2275_length_548_cov_1.452632_g2175_i0 PRJEB76780 2275 548 1.452632 7.96042336 Myxococcota bacterium 2818507 Bacteria Bacteria 82 1.15e-14   NR MFM7200887.1 2818507 g2175 i0 35.7 0.843065693430657 154 94 83.8 5 76 534 23 172 MFM7200887.1 WD40/YVTN/BNR-like repeat-containing protein [Myxococcota bacterium] diamond 462 82 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31132506 31132506 PRJEB76780_P_NODE_5355_length_350_cov_1.126354_g5255_i0 PRJEB76780 5355 350 1.126354 3.942239 Pseudomonadati 3379134 Bacteria Bacteria 71.6 9.18e-12   NR MBW1780099.1 2026735 g5255 i0 57.1 2.11714285714286 63 24 51.4 1 181 2 46 108 MBW1780099.1 carboxylesterase family protein [Deltaproteobacteria bacterium] diamond 741 71.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31171422 31171422 PRJEB76780_P_NODE_13135_length_243_cov_0.917647_g13035_i0 PRJEB76780 13135 243 0.917647 2.22988221 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 41.6 0.047   NR MCB9734260.1 2026735 g13035 i0 32.5 0.987654320987654 80 42 86.4 3 21 230 47 124 MCB9734260.1 PIN domain-containing protein [Deltaproteobacteria bacterium] diamond 240 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31202804 31202804 PRJEB76780_P_NODE_10795_length_251_cov_1.314607_g10695_i0 PRJEB76780 10795 251 1.314607 3.29966357 Myxococcales bacterium 2026763 Bacteria Bacteria 69.3 1.79e-11   NR MCA9539712.1 2026763 g10695 i0 69 1.60159362549801 42 13 50.2 0 14 139 63 104 MCA9539712.1 hypothetical protein [Myxococcales bacterium] diamond 402 69.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31234750 31234750 PRJEB76780_P_NODE_795_length_921_cov_1.511792_g719_i0 PRJEB76780 795 921 1.511792 13.92360432 Myxococcales bacterium 2026763 Bacteria Bacteria 125 3.16e-28   NR MCA9509016.1 2026763 g719 i0 39.4 0.61237785016286606 188 106 58.6 3 708 169 172 359 MCA9509016.1 hypothetical protein [Myxococcales bacterium] diamond 564 125 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31361563 31361563 PRJEB76780_P_NODE_1556_length_662_cov_2.276740_g1459_i0 PRJEB76780 1556 662 2.27674 15.0720188 Polyangium spumosum 889282 Bacteria Bacteria 69.3 1.05e-9   NR WP_206079512.1 889282 g1459 i0 30 2.89577039274924 213 107 85.6 11 636 70 179 373 WP_206079512.1 choice-of-anchor L domain-containing protein [Polyangium spumosum] diamond 1917 69.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium spumosum
31385909 31385909 PRJEB76780_P_NODE_6516_length_316_cov_1.255144_g6416_i0 PRJEB76780 6516 316 1.255144 3.96625504 Pseudomonadati 3379134 Bacteria Bacteria 94.4 6.81e-20   NR WP_228530869.1 31 g6416 i0 56.4 7.29113924050633 94 39 88.3 2 2 280 438 530 WP_228530869.1 MULTISPECIES: M4 family metallopeptidase [Myxococcaceae] diamond 2304 94.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae    
31424635 31424635 PRJEB76780_P_NODE_1596_length_655_cov_2.451890_g1499_i0 PRJEB76780 1596 655 2.45189 16.0598795 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 55.8 3.88e-5   NR MBM4356238.1 2026735 g1499 i0 36.9 0.47175572519084 103 53 41.7 3 516 244 295 397 MBM4356238.1 formylglycine-generating enzyme family protein [Deltaproteobacteria bacterium] diamond 309 55.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31424643 31424643 PRJEB76780_P_NODE_8276_length_282_cov_0.937799_g8176_i0 PRJEB76780 8276 282 0.937799 2.64459318 Polyangiaceae bacterium 2268199 Bacteria Bacteria 64.3 1.08e-9   NR MFO0592913.1 2268199 g8176 i0 48 0.797872340425532 75 34 76.6 3 218 3 73 145 MFO0592913.1 carbonic anhydrase family protein [Polyangiaceae bacterium] diamond 225 64.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31551450 31551450 PRJEB76780_P_NODE_10036_length_256_cov_1.278689_g9936_i0 PRJEB76780 10036 256 1.278689 3.27344384 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 55.1 1.91e-6   NR MBK03624.1 2026735 g9936 i0 40.2 2.8359375 82 49 96.1 0 4 249 211 292 MBK03624.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 726 55.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31614440 31614440 PRJEB76780_P_NODE_7356_length_298_cov_1.040000_g7256_i0 PRJEB76780 7356 298 1.04 3.0992 Myxococcota bacterium 2818507 Bacteria Bacteria 51.2 7.26e-5   NR HJN73531.1 2818507 g7256 i0 31.4 3 102 47 99.7 3 297 1 62 143 HJN73531.1 hypothetical protein [Myxococcota bacterium] diamond 894 51.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32152294 32152294 PRJEB76780_P_NODE_12858_length_244_cov_0.912281_g12758_i0 PRJEB76780 12858 244 0.912281 2.22596564 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 143 1.81e-37   NR MBM4255496.1 2026735 g12758 i0 86.3 0.983606557377049 80 11 98.4 0 3 242 16 95 MBM4255496.1 methionine synthase [Deltaproteobacteria bacterium] diamond 240 143 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32310783 32310783 PRJEB76780_P_NODE_13179_length_242_cov_2.307692_g13079_i0 PRJEB76780 13179 242 2.307692 5.58461464 Paraliomyxa miuraensis 376150 Bacteria Bacteria 79 1.8e-16   NR WP_266221814.1 376150 g13079 i0 66.7 1.09090909090909 45 15 55.8 0 14 148 100 144 WP_266221814.1 type VI secretion system amidase effector protein Tae4 [Paraliomyxa miuraensis] diamond 264 79 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales   Paraliomyxa Paraliomyxa miuraensis
32500525 32500525 PRJEB76780_P_NODE_2999_length_474_cov_1.117207_g2899_i0 PRJEB76780 2999 474 1.117207 5.29556118 Polyangiaceae bacterium 2268199 Bacteria Bacteria 60.5 1.66e-7   NR HEX9296472.1 2268199 g2899 i0 36.3 0.715189873417722 113 51 60.8 6 377 90 104 212 HEX9296472.1 hypothetical protein [Polyangiaceae bacterium] diamond 339 60.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32500528 32500528 PRJEB76780_P_NODE_7679_length_291_cov_2.504587_g7579_i0 PRJEB76780 7679 291 2.504587 7.28834817 Nannocystis sp. 1962667 Bacteria Bacteria 67.8 9.23e-11   NR WP_293275847.1 1962667 g7579 i0 51.7 0.597938144329897 58 27 59.8 1 284 111 286 342 WP_293275847.1 tectonin domain-containing protein [Nannocystis sp.] diamond 174 67.8 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;