RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB76780", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28297487 28297487 PRJEB76780_P_NODE_2366_length_537_cov_1.711207_g2266_i0 PRJEB76780 2366 537 1.711207 9.18918159 Rhabdochlamydiaceae symbiont of Dictyostelium giganteum 3342349 Bacteria Bacteria 89.7 3.73e-17   NR WP_404665995.1 3342349 g2266 i0 35.8 2.72625698324022 162 83 86 4 75 536 182 330 WP_404665995.1 DUF4116 domain-containing protein [Rhabdochlamydiaceae symbiont of Dictyostelium giganteum] diamond 1464 89.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae symbiont of Dictyostelium giganteum
32626469 32626469 PRJEB76780_P_NODE_13340_length_242_cov_0.923077_g13240_i0 PRJEB76780 13340 242 0.923077 2.23384634 Candidatus Acheromyda pituitae 3076874 Bacteria Bacteria 49.3 1.72e-4   NR MBX3718801.1 3076874 g13240 i0 47.5 1.16528925619835 40 21 49.6 0 86 205 36 75 MBX3718801.1 PQQ-binding-like beta-propeller repeat protein [Candidatus Acheromyda pituitae] diamond 282 49.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Acheromyda Candidatus Acheromyda pituitae
32846918 32846918 PRJEB76780_P_NODE_8120_length_284_cov_1.478673_g8020_i0 PRJEB76780 8120 284 1.478673 4.19943132 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 93.2 7.03e-22   NR MBX9923618.1 2047756 g8020 i0 46.4 1.79577464788732 84 45 88.7 0 27 278 22 105 MBX9923618.1 glycine-rich domain-containing protein-like [Rhabdochlamydiaceae bacterium] diamond 510 93.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;