RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB76780", tax_clade = "Bacteria candidate phyla" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJEB76780 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10341746 10341746 PRJEB76780_P_NODE_10969_length_251_cov_0.876404_g10869_i0 PRJEB76780 10969 251 0.876404 2.19977404 Candidatus Binataceae bacterium 2785449 Bacteria Bacteria 129 4.86e-35   NR HZP45989.1 2785449 g10869 i0 78.3 1.9840637450199201 83 18 99.2 0 250 2 162 244 HZP45989.1 ABC transporter ATP-binding protein [Candidatus Binataceae bacterium] diamond 498 129 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia Candidatus Binatales Candidatus Binataceae   Candidatus Binataceae bacterium
29055496 29055496 PRJEB76780_P_NODE_7928_length_287_cov_1.565421_g7828_i0 PRJEB76780 7928 287 1.565421 4.49275827 Candidatus Aminicenantes bacterium 2052149 Bacteria Bacteria 50.4 6.08e-5   NR MBN2199813.1 2052149 g7828 i0 33.8 0.804878048780488 77 51 80.5 0 279 49 75 151 MBN2199813.1 PH domain-containing protein [Candidatus Aminicenantes bacterium] diamond 231 50.4 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium
29339632 29339632 PRJEB76780_P_NODE_9109_length_269_cov_1.193878_g9009_i0 PRJEB76780 9109 269 1.193878 3.21153182 Candidatus Daviesbacteria bacterium GW2 2053542 Bacteria Bacteria 124 2.4e-31   NR KKR81320.1 1618430 g9009 i0 61.8 0.992565055762082 89 31 95.9 1 12 269 8 96 KKR81320.1 MAG: Histidyl-tRNA synthetase [Candidatus Daviesbacteria bacterium GW2011_GWC1_40_9] diamond 267 124 1 Bacteria Bacteria candidate phyla   Candidatus Daviesiibacteriota         Candidatus Daviesbacteria bacterium GW2011_GWC1_40_9
32563847 32563847 PRJEB76780_P_NODE_13439_length_242_cov_0.923077_g13339_i0 PRJEB76780 13439 242 0.923077 2.23384634 Candidatus Microgenomates bacterium CPR3 2293638 Bacteria Bacteria 107 6.17e-25   NR MCE7897999.1 2293638 g13339 i0 70.9 0.979338842975207 79 23 97.9 0 5 241 88 166 MCE7897999.1 hypothetical protein [Candidatus Microgenomates bacterium CPR3] diamond 237 107 1 Bacteria Bacteria candidate phyla   Candidatus Microgenomatota         Candidatus Microgenomates bacterium CPR3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;