RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB7614", tax_phylum = "Deinococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Deinococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7614 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25752642 25752642 PRJEB7614a_S_NODE_62978_length_242_cov_3.420290_g61774_i0 PRJEB7614 62978 242 3.42029 8.2771018 Truepera 332248 Bacteria Bacteria 315 2.52e-81   NTclustered gi|2573973991|gb|CP133611.1| 332249 g61774 i0 91.667 637.842975206612 228 18 94 1 1 227 762247 762020 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 154358 315 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
25888373 25888373 PRJEB7614e_S_NODE_11435_length_172_cov_4.306569_g11427_i0 PRJEB7614 11435 172 4.306569 7.40729868 Truepera 332248 Bacteria Bacteria 228 2.2299999999999997e-55   NTclustered gi|470486385|ref|NR_076754.1| 332249 g11427 i0 92.453 450.645348837209 159 12 92 0 14 172 214 56 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 77511 228 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;