RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB7614", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB7614 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25525699 25525699 PRJEB7614e_S_NODE_569_length_283_cov_37.201613_g561_i0 PRJEB7614 569 283 37.201613 105.28056479 Pendulispora rubella 2741070 Bacteria Bacteria 255 1.85e-63   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g561 i0 87.387 147.339222614841 222 28 78 0 26 247 7290015 7289794 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 41697 255 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
25797705 25797705 PRJEB7614a_S_NODE_50579_length_269_cov_23.948718_g49375_i0 PRJEB7614 50579 269 23.948718 64.42205142 Labilithrix luteola 1391654 Bacteria Bacteria 381 2.7699999999999995e-101   NTclustered gi|913610804|gb|CP012333.1| 1391654 g49375 i0 92.222 162.334572490706 270 19 100 2 1 269 3942903 3942635 Labilithrix luteola strain DSM 27648, complete genome blastn 43668 381 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;