RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJEB7614", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 10 ✖

tax_kingdom 1

  • Metazoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJEB7614 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25797731 25797731 PRJEB7614b_S_NODE_555_length_258_cov_53296.466368_g553_i0 PRJEB7614 555 258 53296.466368 137504.88322944 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 93.5 1.38e-14   NTclustered gi|687789777|emb|LK829830.1| 57078 g553 i0 98.148 21.0658914728682 54 0 21 1 205 258 533 585 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 5435 93.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
25888351 25888351 PRJEB7614a_S_NODE_75443_length_219_cov_1997.038043_g74239_i0 PRJEB7614 75443 219 1997.038043 4373.51331417 root 1 Root_unresolved Root_unresolved 100 6.82e-17   NTclustered gi|687789777|emb|LK829830.1| 57078 g74239 i0 98.246 27.5251141552511 57 1 26 0 1 57 594 538 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6028 100 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26024682 26024682 PRJEB7614b_S_NODE_772_length_232_cov_64930.365482_g770_i0 PRJEB7614 772 232 64930.365482 150638.44791824 root 1 Root_unresolved Root_unresolved 108 4.37e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g770 i0 98.387 26.5603448275862 62 0 27 1 1 62 595 535 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6162 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26069943 26069943 PRJEB7614b_S_NODE_253_length_324_cov_41253.173010_g251_i0 PRJEB7614 253 324 41253.17301 133660.2805524 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 89.8 2.32e-13   NTclustered gi|687789777|emb|LK829830.1| 57078 g251 i0 92.188 16.0833333333333 64 3 19 2 263 324 519 582 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 5211 89.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26160824 26160824 PRJEB7614a_S_NODE_21605_length_372_cov_1117.590504_g20414_i0 PRJEB7614 21605 372 1117.590504 4157.43667488 root 1 Root_unresolved Root_unresolved 100 1.25e-16   NTclustered gi|687789777|emb|LK829830.1| 57078 g20414 i0 98.246 16.1370967741935 57 1 15 0 1 57 594 538 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6003 100 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26160863 26160863 PRJEB7614e_S_NODE_661_length_271_cov_36063.156780_g653_i0 PRJEB7614 661 271 36063.15678 97731.1548738 root 1 Root_unresolved Root_unresolved 113 1.12e-20   NTclustered gi|687789777|emb|LK829830.1| 57078 g653 i0 97.015 25.3394833948339 67 2 25 0 205 271 536 602 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6867 113 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26296605 26296605 PRJEB7614c_S_NODE_918_length_214_cov_453.335196_g917_i0 PRJEB7614 918 214 453.335196 970.13731944 root 1 Root_unresolved Root_unresolved 95.3 3.09e-15   NTclustered gi|687789777|emb|LK829830.1| 57078 g917 i0 98.148 27.6869158878505 54 1 25 0 1 54 591 538 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 5925 95.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26432626 26432626 PRJEB7614b_S_NODE_7_length_616_cov_23000.666093_g6_i0 PRJEB7614 7 616 23000.666093 141684.10313288 root 1 Root_unresolved Root_unresolved 108 1.29e-18   NTclustered gi|687789777|emb|LK829830.1| 57078 g6 i0 100 9.87824675324675 58 0 9 0 1 58 595 538 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6085 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26568606 26568606 PRJEB7614a_S_NODE_36872_length_308_cov_1337.494505_g35668_i0 PRJEB7614 36872 308 1337.494505 4119.4830754 root 1 Root_unresolved Root_unresolved 100 1.01e-16   NTclustered gi|687789777|emb|LK829830.1| 57078 g35668 i0 91.781 19.6428571428571 73 5 23 1 237 308 522 594 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6050 100 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26568629 26568629 PRJEB7614b_S_NODE_296_length_312_cov_46143.400722_g294_i0 PRJEB7614 296 312 46143.400722 143967.41025264 root 1 Root_unresolved Root_unresolved 108 6.14e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g294 i0 100 19.6923076923077 58 0 19 0 1 58 595 538 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6144 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;