RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB7614" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJEB7614 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25933928 25933928 PRJEB7614a_S_NODE_42604_length_290_cov_98.164706_g41400_i0 PRJEB7614 42604 290 98.164706 284.6776474 Cetobacterium somerae 188913 Bacteria Bacteria 477 3.74e-130   NTclustered gi|2201062197|gb|CP092519.1| 188913 g41400 i0 99.242 432.527586206897 264 2 91 0 5 268 49132 48869 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 125433 477 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
26069954 26069954 PRJEB7614d_S_NODE_1173_length_211_cov_6.551136_g1135_i0 PRJEB7614 1173 211 6.551136 13.82289696 Sneathia vaginalis 187101 Bacteria Bacteria 255 1.32e-63   NTclustered gi|808076794|gb|CP011280.1| 187101 g1135 i0 91.005 213.312796208531 189 17 90 0 1 189 160067 159879 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 45009 255 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
26296608 26296608 PRJEB7614d_S_NODE_958_length_225_cov_4.473684_g920_i0 PRJEB7614 958 225 4.473684 10.065789 Fusobacterium 848 Bacteria Bacteria 363 8.139999999999999e-96   NTclustered gi|2704983719|gb|CP077132.1| 851 g920 i0 99.01 410.164444444444 202 2 90 0 24 225 91625 91826 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 92287 366 0.991803278688525 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
26342023 26342023 PRJEB7614a_S_NODE_106871_length_179_cov_3.270833_g105667_i0 PRJEB7614 106871 179 3.270833 5.85479107 Fusobacterium hwasookii ChDC F174 1307442 Bacteria Bacteria 235 1.4e-57   NTclustered gi|958162200|gb|CP013331.1| 1307442 g105667 i0 90.503 471 179 15 99 2 1 178 310375 310552 Fusobacterium hwasookii ChDC F174, complete genome blastn 84309 235 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;