RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJEB7614", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 8 ✖

tax_clade 1

bioproject 1

  • PRJEB7614 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18848119 18848119 PRJEB7614_P_NODE_2235_length_252_cov_310823.466368_g2168_i0 PRJEB7614 2235 252 310823.466368 783275.13524736 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 270 5.7999999999999984e-68   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g2168 i0 98.065 48.6428571428571 155 3 62 0 12 166 2649 2495 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 12258 270 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
20539640 20539640 PRJEB7614_P_NODE_1857_length_268_cov_21.962343_g1790_i0 PRJEB7614 1857 268 21.962343 58.85907924 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 370 5.96e-98   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g1790 i0 93.254 9.17910447761194 252 15 94 2 5 255 112 362 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 2460 370 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
25661663 25661663 PRJEB7614c_S_NODE_66_length_414_cov_7.313984_g65_i0 PRJEB7614 66 414 7.313984 30.27989376 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 558 1.92e-154   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g65 i0 94.49 47.6980676328502 363 18 87 2 21 382 1 362 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 19747 558 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
25888354 25888354 PRJEB7614a_S_NODE_85731_length_204_cov_4.733728_g84527_i0 PRJEB7614 85731 204 4.733728 9.65680512 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 372 1.2e-98   NTclustered gi|1837628855|gb|MN158348.1| 5909 g84527 i0 99.51 87.5588235294118 204 1 100 0 1 204 2735 2938 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 17862 372 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
26069942 26069942 PRJEB7614b_S_NODE_117_length_382_cov_33606.259366_g115_i0 PRJEB7614 117 382 33606.259366 128375.91077812 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 436 8.61e-118   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g115 i0 93.537 18.6020942408377 294 17 77 2 77 369 362 70 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 7106 436 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
26160819 26160819 PRJEB7614a_S_NODE_127853_length_160_cov_1.912000_g126649_i0 PRJEB7614 127853 160 1.912 3.0592 root 1 Root_unresolved Root_unresolved 291 2.5799999999999998e-74   NTclustered gi|10832|emb|X54512.1| 5911 g126649 i0 99.375 95.7125 160 1 100 0 1 160 8308 8149 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 15314 291 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26206242 26206242 PRJEB7614e_S_NODE_2446_length_199_cov_4.603659_g2438_i0 PRJEB7614 2446 199 4.603659 9.16128141 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 291 3.3599999999999998e-74   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g2438 i0 93 5.98492462311558 200 12 100 2 1 199 147 345 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1191 291 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
26342059 26342059 PRJEB7614c_S_NODE_1447_length_196_cov_5.173913_g1446_i0 PRJEB7614 1447 196 5.173913 10.14086948 Dysteria brasiliensis 497733 SAR_Eukaryotes SAR_Eukaryotes 152 1.6199999999999998e-32   NTclustered gi|1216628402|gb|KX099196.1| 497733 g1446 i0 81.095 1.75510204081633 201 28 100 7 1 196 67 262 Dysteria brasiliensis clone DB3 28S ribosomal RNA gene, partial sequence blastn 344 152 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Dysteriidae Dysteria Dysteria brasiliensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;