RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJEB7614", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB7614 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22673332 22673332 PRJEB7614_P_NODE_10018_length_154_cov_1.680000_g9951_i0 PRJEB7614 10018 154 1.68 2.5872 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 172 9.3e-39   NTclustered gi|220983374|dbj|AB453010.1| 467061 g9951 i0 98.958 62.1428571428571 96 1 62 0 59 154 1881 1786 Chlorarachniophyceae sp. P329 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 9570 172 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae       Chlorarachniophyceae sp. P329
23948865 23948865 PRJEB7614_P_NODE_2419_length_246_cov_5.262673_g2352_i0 PRJEB7614 2419 246 5.262673 12.94617558 Cercomonas 45109 SAR_Eukaryotes SAR_Eukaryotes 185 2.1e-42   NTclustered gi|161015710|gb|EF681944.1| 458870 g2352 i0 98.113 58.4105691056911 106 2 43 0 17 122 228 123 Cercomonas sp. HFCC543 28S ribosomal RNA gene, partial sequence blastn 14369 185 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. HFCC543
25888365 25888365 PRJEB7614b_S_NODE_9955_length_151_cov_2.077586_g9953_i0 PRJEB7614 9955 151 2.077586 3.13715486 Cercomonadidae 45108 SAR_Eukaryotes SAR_Eukaryotes 279 5.19e-71   NTclustered gi|1695780|gb|U42448.1|CAU42448 45110 g9953 i0 100 100.35761589404 151 0 100 0 1 151 360 210 Cercomonas ATCC50316 18S ribosomal RNA gene, complete sequence blastn 15154 279 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. ATCC 50316
26024668 26024668 PRJEB7614a_S_NODE_77988_length_215_cov_13.277778_g76784_i0 PRJEB7614 77988 215 13.277778 28.5472227 Cercomonas 45109 SAR_Eukaryotes SAR_Eukaryotes 326 1.01e-84   NTclustered gi|161015708|gb|EF681942.1| 458868 g76784 i0 93.953 97.553488372093 215 13 100 0 1 215 267 53 Cercomonas sp. HFCC540 28S ribosomal RNA gene, partial sequence blastn 20974 326 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. HFCC540
26069928 26069928 PRJEB7614a_S_NODE_62893_length_242_cov_4.961353_g61689_i0 PRJEB7614 62893 242 4.961353 12.00647426 Cercomonas sp. 1979794 SAR_Eukaryotes SAR_Eukaryotes 128 3.52e-25   NTclustered gi|2651357794|gb|PP174308.1| 1979794 g61689 i0 82.278 75.702479338843 158 19 65 7 39 195 3830 3681 Cercomonas sp. isolate JGP5 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18320 128 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp.
26296598 26296598 PRJEB7614b_S_NODE_1238_length_203_cov_3.982143_g1236_i0 PRJEB7614 1238 203 3.982143 8.08375029 Cercomonas 45109 SAR_Eukaryotes SAR_Eukaryotes 309 9.51e-80   NTclustered gi|161015710|gb|EF681944.1| 458870 g1236 i0 95.833 86.5911330049261 192 6 95 2 1 192 230 41 Cercomonas sp. HFCC543 28S ribosomal RNA gene, partial sequence blastn 17578 309 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp. HFCC543

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;