RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB75230" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB75230 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27255405 27255405 PRJEB75230_P_NODE_80383_length_279_cov_1.495146_g80201_i0 PRJEB75230 80383 279 1.495146 4.17145734 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 54.7 3.5e-6   NR XP_067771993.1 135588 g80201 i0 30.7 1.78494623655914 88 60 94.6 1 10 273 251 337 XP_067771993.1 Pumilio-family RNA binding repeat containing protein [Histomonas meleagridis] diamond 498 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29900726 29900726 PRJEB75230_P_NODE_185171_length_235_cov_2.388889_g184989_i0 PRJEB75230 185171 235 2.388889 5.61388915 root 1 Root_unresolved Root_unresolved 43.5 0.0184   NR XP_068351332.1 1144522 g184989 i0 46.4 1.60851063829787 56 29 71.5 1 177 10 356 410 XP_068351332.1 leucine-rich repeat-containing protein [Tritrichomonas foetus] diamond 378 43.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30413655 30413655 PRJEB75230_P_NODE_71293_length_287_cov_1.953271_g71111_i0 PRJEB75230 71293 287 1.953271 5.60588777 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 63.2 4.22e-9   NR XP_068366438.1 1144522 g71111 i0 40 0.731707317073171 70 42 73.2 0 1 210 237 306 XP_068366438.1 TKL family protein kinase [Tritrichomonas foetus] diamond 210 63.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;