RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB75230" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB75230 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27532498 27532498 PRJEB75230_P_NODE_53803_length_307_cov_1.252137_g53621_i0 PRJEB75230 53803 307 1.252137 3.8440605900000002 Nitrosopumilaceae 338190 Archaea Archaea 110 1.02e-25   NR MFB5616604.1 2024843 g53621 i0 58 3.9185667752443 100 41 97.7 1 6 305 258 356 MFB5616604.1 copper-translocating P-type ATPase [Nitrosopumilus sp.] diamond 1203 110 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
29654828 29654828 PRJEB75230_P_NODE_68770_length_290_cov_1.064516_g68588_i0 PRJEB75230 68770 290 1.064516 3.0870964 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 43.5 0.0345   NR MFB5600260.1 2169593 g68588 i0 37.8 0.76551724137931 74 43 73.4 1 13 225 81 154 MFB5600260.1 DNA polymerase/3'-5' exonuclease PolX [Nitrososphaeraceae archaeon] diamond 222 43.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
31077020 31077020 PRJEB75230_P_NODE_41455_length_325_cov_1.408730_g41273_i0 PRJEB75230 41455 325 1.40873 4.5783725 Nitrososphaerota archaeon 2026795 Archaea Archaea 43.9 0.0365   NR MEM1676955.1 2026795 g41273 i0 36.9 0.6 65 40 60 1 120 314 503 566 MEM1676955.1 glycoside hydrolase family 31 protein [Nitrososphaerota archaeon] diamond 195 43.9 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
32405447 32405447 PRJEB75230_P_NODE_170179_length_243_cov_0.905882_g169997_i0 PRJEB75230 170179 243 0.905882 2.20129326 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 54.7 6.93e-7   NR HEY7081356.1 2169593 g169997 i0 85.2 0.864197530864197 27 4 33.3 0 163 243 23 49 HEY7081356.1 RidA family protein [Nitrososphaeraceae archaeon] diamond 210 54.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;