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contig_metadata

23 rows where bioproject = "PRJEB75230" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 23 ✖

bioproject 1

  • PRJEB75230 · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9063449 9063449 PRJEB75230_P_NODE_134188_length_249_cov_0.875000_g134006_i0 PRJEB75230 134188 249 0.875 2.17875 Betaretrovirus 140052 Viruses Viruses 109 1.5e-25   NR P51517.2 39068 g134006 i0 76.8 6.69879518072289 69 16 83.1 0 233 27 943 1011 P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] diamond 1668 110 0.990909090909091 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
9924193 9924193 PRJEB75230_P_NODE_53108_length_308_cov_1.174468_g52926_i0 PRJEB75230 53108 308 1.174468 3.61736144 Betaretrovirus 140052 Viruses Viruses 154 5.61e-41   NR P51517.2 39068 g52926 i0 72.5 9.92532467532468 102 28 99.4 0 1 306 630 731 P51517.2 RecName: Full=Gag-Pro-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Contains: RecName: Full=Phosphorylated protein pp24; Contains: RecName: Full=Phosphorylated protein pp18; Contains: RecName: Full=p12; Contains: RecName: Full=Capsid protein p27; Contains: RecName: Full=Nucleocapsid protein-dUTPase; Short=NC-dUTPase; Contains: RecName: Full=Protease 17 kDa; Contains: RecName: Full=Protease 13 kDa; Contains: RecName: Full=G-patch peptide; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Simian retrovirus 2] diamond 3057 155 0.993548387096774 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
10340232 10340232 PRJEB75230_P_NODE_38189_length_331_cov_1.492248_g38007_i0 PRJEB75230 38189 331 1.492248 4.93934088 Lentivirus humimdef1 3418650 Viruses Viruses 84.2 1.11e-11   NTclustered gi|2514203914|gb|OQ751943.1| 11676 g38007 i0 81.553 2.69486404833837 103 18 31 1 161 263 1642 1541 HIV-1 isolate BC003_proviral_154_Chimera from Canada defective provirus genomic sequence blastn 892 84.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
11198989 11198989 PRJEB75230_P_NODE_107829_length_258_cov_1.135135_g107647_i0 PRJEB75230 107829 258 1.135135 2.9286483 root 1 Root_unresolved Root_unresolved 86.3 2.14e-17   NR pir|D40899| 11751 g107647 i0 51.9 8.01162790697674 77 37 89.5 0 232 2 246 322 pir|D40899| pol polyprotein - Chinese hamster intracisternal A-particle CHIAP34 [Chinese hamster Intracisternal A-particle CHIAP34] diamond 2067 86.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Intracisternal A-particles Chinese hamster Intracisternal A-particle CHIAP34
12890613 12890613 PRJEB75230_P_NODE_31111_length_346_cov_1.520147_g30929_i0 PRJEB75230 31111 346 1.520147 5.25970862 Prosimian retrovirus 1 2821277 Viruses Viruses 132 6.889999999999998e-35   NR QTI96651.1 2821277 g30929 i0 72.8 1.40462427745665 81 22 70.2 0 245 3 189 269 QTI96651.1 pro, partial [Prosimian retrovirus 1] diamond 486 132 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Prosimian retrovirus 1
15439471 15439471 PRJEB75230_P_NODE_29593_length_350_cov_1.599278_g29411_i0 PRJEB75230 29593 350 1.599278 5.597473 Simian retrovirus 8 1904439 Viruses Viruses 162 1.6599999999999996e-43   NR AOS48109.1 1904439 g29411 i0 69 6 100 31 85.7 0 301 2 755 854 AOS48109.1 pol protein, partial [Simian retrovirus 8] diamond 2100 162 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Simian retrovirus 8
19262540 19262540 PRJEB75230_P_NODE_28136_length_355_cov_0.950355_g27954_i0 PRJEB75230 28136 355 0.950355 3.37376025 Betaretrovirus 140052 Viruses Viruses 146 3.21e-41   NR NP_954564.1 11855 g27954 i0 71.8 7.83380281690141 103 27 85.4 1 355 53 98 200 NP_954564.1 DU [Mason-Pfizer monkey virus] diamond 2781 146 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
27974546 27974546 PRJEB75230_P_NODE_103565_length_261_cov_1.218085_g103383_i0 PRJEB75230 103565 261 1.218085 3.17920185 root 1 Root_unresolved Root_unresolved 125 2.75e-31   NR AAC97567.1 1048243 g103383 i0 72 4.79310344827586 82 23 94.3 0 10 255 312 393 AAC97567.1 polymerase, partial [Simian endogenous retrovirus] diamond 1251 125 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
28226869 28226869 PRJEB75230_P_NODE_35126_length_337_cov_1.587121_g34944_i0 PRJEB75230 35126 337 1.587121 5.34859777 Betaretrovirus 140052 Viruses Viruses 144 3.34e-37   NR ADC52788.1 723802 g34944 i0 62.9 8.3946587537092 105 39 93.5 0 9 323 386 490 ADC52788.1 pol protein, partial [Simian retrovirus 4] diamond 2829 144 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Simian retrovirus 4
29024129 29024129 PRJEB75230_P_NODE_132808_length_249_cov_0.875000_g132626_i0 PRJEB75230 132808 249 0.875 2.17875 Mason-Pfizer monkey virus 11855 Viruses Viruses 76.3 6.4e-14   NR NP_056891.1 11855 g132626 i0 56.4 1.87951807228916 55 24 66.3 0 80 244 1715 1769 NP_056891.1 RT-IN [Mason-Pfizer monkey virus] diamond 468 76.6 0.996083550913838 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
29363958 29363958 PRJEB75230_P_NODE_33209_length_341_cov_1.485075_g33027_i0 PRJEB75230 33209 341 1.485075 5.06410575 Betaretrovirus 140052 Viruses Viruses 166 4.28e-45   NR NP_056891.1 11855 g33027 i0 67 3.94134897360704 112 37 98.5 0 341 6 1559 1670 NP_056891.1 RT-IN [Mason-Pfizer monkey virus] diamond 1344 166 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
30160376 30160376 PRJEB75230_P_NODE_72872_length_286_cov_1.230047_g72690_i0 PRJEB75230 72872 286 1.230047 3.51793442 Simian endogenous retrovirus 1048243 Viruses Viruses 54.3 5.24e-6   NR AAC97567.1 1048243 g72690 i0 47.8 2.06643356643357 67 30 70.3 1 6 206 441 502 AAC97567.1 polymerase, partial [Simian endogenous retrovirus] diamond 591 54.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
30406451 30406451 PRJEB75230_P_NODE_71713_length_287_cov_1.317757_g71531_i0 PRJEB75230 71713 287 1.317757 3.78196259 Betaretrovirus 140052 Viruses Viruses 129 2.4599999999999995e-32   NR NP_056891.1 11855 g71531 i0 66.7 7.80836236933798 93 28 97.2 1 8 286 1479 1568 NP_056891.1 RT-IN [Mason-Pfizer monkey virus] diamond 2241 129 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
30595504 30595504 PRJEB75230_P_NODE_40633_length_327_cov_0.937008_g40451_i0 PRJEB75230 40633 327 0.937008 3.06401616 Betaretrovirus 140052 Viruses Viruses 96.3 1.7e-20   NR BAA03767.1 11757 g40451 i0 49.5 7 109 51 100 2 327 1 420 524 BAA03767.1 gag pro pol polyprotein, partial [Mouse mammary tumor virus] diamond 2289 96.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
30919103 30919103 PRJEB75230_P_NODE_183974_length_241_cov_0.916667_g183792_i0 PRJEB75230 183974 241 0.916667 2.20916747 Bovine retrovirus CH15 1822365 Viruses Viruses 88.2 3.7e-18   NR YP_009243641.1 1822365 g183792 i0 55.4 1.8298755186722 74 33 92.1 0 241 20 22 95 YP_009243641.1 putative viral DNA polymerase [Bovine retrovirus CH15] diamond 441 88.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Bovine retrovirus CH15
31171390 31171390 PRJEB75230_P_NODE_138355_length_248_cov_0.880000_g138173_i0 PRJEB75230 138355 248 0.88 2.1824 Retroviridae sp. 2681591 Viruses Viruses 63.5 1.86e-9   NR XNT20491.1 2681591 g138173 i0 59.6 0.689516129032258 57 20 65.3 1 29 190 539 595 XNT20491.1 MAG: hypothetical protein, partial [Retroviridae sp.] diamond 171 63.5 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Retroviridae sp.
31796757 31796757 PRJEB75230_P_NODE_157457_length_245_cov_0.895349_g157275_i0 PRJEB75230 157457 245 0.895349 2.19360505 Alpharetrovirus 153057 Viruses Viruses 103 2.06e-23   NR CAA45618.1 11961 g157275 i0 59.3 9.91836734693878 81 33 99.2 0 3 245 92 172 CAA45618.1 Reverse Transcriptase-and Integrase precursor [Lymphoproliferative disease virus] diamond 2430 104 0.990384615384615 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Lymphoproliferative disease virus
31994022 31994022 PRJEB75230_P_NODE_173218_length_242_cov_0.934911_g173036_i0 PRJEB75230 173218 242 0.934911 2.26248462 Simian endogenous retrovirus 1048243 Viruses Viruses 100 1.74e-22   NR AAC97567.1 1048243 g173036 i0 60.3 3.6198347107438 73 29 90.5 0 23 241 295 367 AAC97567.1 polymerase, partial [Simian endogenous retrovirus] diamond 876 100 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
32057287 32057287 PRJEB75230_P_NODE_59518_length_300_cov_1.281938_g59336_i0 PRJEB75230 59518 300 1.281938 3.845814 Black Syrian hamster retrovirus 2594425 Viruses Viruses 59.7 8.44e-8   NR QDK64674.1 2594425 g59336 i0 34.6 2.91 107 47 86 3 297 40 696 800 QDK64674.1 pro-pol, partial [Black Syrian hamster retrovirus] diamond 873 59.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Black Syrian hamster retrovirus
32120728 32120728 PRJEB75230_P_NODE_138658_length_248_cov_0.880000_g138476_i0 PRJEB75230 138658 248 0.88 2.1824 Simian retrovirus 8 1904439 Viruses Viruses 129 1.4e-32   NR AOS48109.1 1904439 g138476 i0 72 4.95967741935484 82 21 99.2 1 246 1 744 823 AOS48109.1 pol protein, partial [Simian retrovirus 8] diamond 1230 129 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Simian retrovirus 8
32145043 32145043 PRJEB75230_P_NODE_9578_length_478_cov_1.412346_g9396_i0 PRJEB75230 9578 478 1.412346 6.75101388 Betaretrovirus 140052 Viruses Viruses 225 5.21e-66   NR NP_041261.1 11856 g9396 i0 69 4.88284518828452 155 48 97.3 0 12 476 304 458 NP_041261.1 pol protein [Squirrel monkey retrovirus] diamond 2334 225 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
32279027 32279027 PRJEB75230_P_NODE_73399_length_286_cov_0.882629_g73217_i0 PRJEB75230 73399 286 0.882629 2.52431894 Squirrel monkey retrovirus 11856 Viruses Viruses 113 8.17e-27   NR NP_041261.1 11856 g73217 i0 55.8 1.99300699300699 95 41 99.7 1 1 285 475 568 NP_041261.1 pol protein [Squirrel monkey retrovirus] diamond 570 113 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus squmon
32405451 32405451 PRJEB75230_P_NODE_180859_length_241_cov_0.916667_g180677_i0 PRJEB75230 180859 241 0.916667 2.20916747 Mason-Pfizer monkey virus 11855 Viruses Viruses 123 1.82e-30   NR NP_056891.1 11855 g180677 i0 69.6 1.96680497925311 79 24 98.3 0 3 239 1266 1344 NP_056891.1 RT-IN [Mason-Pfizer monkey virus] diamond 474 123 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;