RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB75230", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB75230 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27571328 27571328 PRJEB75230_P_NODE_86524_length_274_cov_1.482587_g86342_i0 PRJEB75230 86524 274 1.482587 4.06228838 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.5 0.0287   NR MFH1776568.1 2035772 g86342 i0 36.5 0.569343065693431 52 31 56.9 1 119 274 209 258 MFH1776568.1 CheR family methyltransferase [Candidatus Omnitrophota bacterium] diamond 156 43.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28139921 28139921 PRJEB75230_P_NODE_132245_length_249_cov_0.875000_g132063_i0 PRJEB75230 132245 249 0.875 2.17875 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 145 2.17e-40   NR MDO8729935.1 2035772 g132063 i0 89.2 1 83 9 100 0 1 249 122 204 MDO8729935.1 glutamyl-tRNA reductase [Candidatus Omnitrophota bacterium] diamond 249 145 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30065700 30065700 PRJEB75230_P_NODE_2972_length_782_cov_2.544429_g2808_i0 PRJEB75230 2972 782 2.544429 19.89743478 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 47.4 0.0385   NR MEW6101200.1 2035772 g2808 i0 41.8 0.210997442455243 55 31 20.7 1 249 88 329 383 MEW6101200.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 165 47.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32878416 32878416 PRJEB75230_P_NODE_176960_length_242_cov_0.911243_g176778_i0 PRJEB75230 176960 242 0.911243 2.20520806 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 48.9 2.37e-4   NR MBA3051812.1 2035772 g176778 i0 38.5 0.966942148760331 78 39 85.5 2 230 24 23 100 MBA3051812.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 234 48.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;