RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJEB75227" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJEB75227 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5238162 5238162 PRJEB75227_P_NODE_11185_length_244_cov_0.912281_g11014_i0 PRJEB75227 11185 244 0.912281 2.22596564 Pyxidicoccus parkwayensis 2813578 Bacteria Bacteria 281 2.58e-71   NTclustered gi|1998505907|gb|CP071090.1| 2813578 g11014 i0 87.866 3.71311475409836 239 29 98 0 6 244 13133763 13134001 Pyxidicoccus parkwaysis strain SCPEA02 chromosome blastn 906 281 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus parkwayensis
14164017 14164017 PRJEB75227_P_NODE_5352_length_302_cov_1.362445_g5181_i0 PRJEB75227 5352 302 1.362445 4.1145839 Myxococcota bacterium 2818507 Bacteria Bacteria 88.2 1.71e-18   NR MEM7437925.1 2818507 g5181 i0 60.9 0.635761589403974 64 25 63.6 0 301 110 99 162 MEM7437925.1 alpha/beta fold hydrolase [Myxococcota bacterium] diamond 192 88.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
16712300 16712300 PRJEB75227_P_NODE_10634_length_245_cov_1.000000_g10463_i0 PRJEB75227 10634 245 1 2.45 Pseudomonadati 3379134 Bacteria Bacteria 104 2.6599999999999998e-24   NR MBW1839446.1 2026735 g10463 i0 73 17.9020408163265 63 17 77.1 0 230 42 201 263 MBW1839446.1 elongation factor Tu [Deltaproteobacteria bacterium] diamond 4386 104 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27065709 27065709 PRJEB75227_P_NODE_8542_length_252_cov_0.871508_g8371_i0 PRJEB75227 8542 252 0.871508 2.19620016 Myxococcota bacterium 2818507 Bacteria Bacteria 44.7 0.00111   NR HKE12440.1 2818507 g8371 i0 76.2 0.25 21 5 25 0 250 188 47 67 HKE12440.1 hypothetical protein [Myxococcota bacterium] diamond 63 44.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28044875 28044875 PRJEB75227_P_NODE_7345_length_266_cov_1.554404_g7174_i0 PRJEB75227 7345 266 1.554404 4.13471464 Myxococcota bacterium 2818507 Bacteria Bacteria 139 1.14e-37   NR HET6344165.1 2818507 g7174 i0 75.9 0.981203007518797 87 21 98.1 0 5 265 6 92 HET6344165.1 serine/threonine-protein kinase [Myxococcota bacterium] diamond 261 139 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29055447 29055447 PRJEB75227_P_NODE_9768_length_248_cov_0.891429_g9597_i0 PRJEB75227 9768 248 0.891429 2.21074392 Myxococcota bacterium 2818507 Bacteria Bacteria 63.9 1.61e-10   NR MBP7160936.1 2818507 g9597 i0 100 0.375 31 0 37.5 0 1 93 122 152 MBP7160936.1 biopolymer transporter ExbD [Myxococcota bacterium] diamond 93 63.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29433880 29433880 PRJEB75227_P_NODE_7730_length_260_cov_1.117647_g7559_i0 PRJEB75227 7730 260 1.117647 2.9058822 Polyangiaceae bacterium 2268199 Bacteria Bacteria 58.2 4.18e-8   NR HET9954091.1 2268199 g7559 i0 61 0.473076923076923 41 16 47.3 0 2 124 77 117 HET9954091.1 hypothetical protein [Polyangiaceae bacterium] diamond 123 58.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30445093 30445093 PRJEB75227_P_NODE_3813_length_367_cov_1.520408_g3642_i0 PRJEB75227 3813 367 1.520408 5.57989736 Myxococcales bacterium 2026763 Bacteria Bacteria 88.6 6.23e-20   NR MCA9640749.1 2026763 g3642 i0 82.1 0.457765667574932 56 10 45.8 0 1 168 57 112 MCA9640749.1 hypothetical protein [Myxococcales bacterium] diamond 168 88.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31045592 31045592 PRJEB75227_P_NODE_9835_length_248_cov_0.891429_g9664_i0 PRJEB75227 9835 248 0.891429 2.21074392 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.2 1.42e-7   NR MBN8536338.1 2026735 g9664 i0 48.3 1.35483870967742 60 24 72.6 1 2 181 397 449 MBN8536338.1 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO [Deltaproteobacteria bacterium] diamond 336 58.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31171383 31171383 PRJEB75227_P_NODE_8155_length_253_cov_1.100000_g7984_i0 PRJEB75227 8155 253 1.1 2.783 Sorangium cellulosum 56 Bacteria Bacteria 42.4 0.0472   NR KYF73472.1 56 g7984 i0 48.4 0.735177865612648 62 31 73.5 1 45 230 134 194 KYF73472.1 hypothetical protein BE17_24905 [Sorangium cellulosum] diamond 186 42.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
31804040 31804040 PRJEB75227_P_NODE_3117_length_416_cov_0.909621_g2946_i0 PRJEB75227 3117 416 0.909621 3.78402336 Polyangiaceae bacterium 2268199 Bacteria Bacteria 46.6 0.0103   NR MBK9263173.1 2268199 g2946 i0 37.5 0.461538461538462 64 27 46.2 2 24 215 219 269 MBK9263173.1 hypothetical protein [Polyangiaceae bacterium] diamond 192 46.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31962327 31962327 PRJEB75227_P_NODE_6238_length_284_cov_0.985782_g6067_i0 PRJEB75227 6238 284 0.985782 2.79962088 Myxococcales bacterium 2026763 Bacteria Bacteria 53.1 6.99e-6   NR MBK8215412.1 2026763 g6067 i0 42.2 0.676056338028169 64 31 67.6 1 26 217 145 202 MBK8215412.1 glutathione S-transferase family protein [Myxococcales bacterium] diamond 192 53.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32721028 32721028 PRJEB75227_P_NODE_7240_length_268_cov_1.200000_g7069_i0 PRJEB75227 7240 268 1.2 3.216 Myxococcota bacterium 2818507 Bacteria Bacteria 64.3 1.26e-9   NR MDP6944889.1 2818507 g7069 i0 43 0.962686567164179 86 49 96.3 0 1 258 215 300 MDP6944889.1 serine/threonine-protein kinase [Myxococcota bacterium] diamond 258 64.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;