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contig_metadata

32 rows where bioproject = "PRJEB75227" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75227 · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
135664 135664 PRJEB75227_P_NODE_8801_length_251_cov_0.876404_g8630_i0 PRJEB75227 8801 251 0.876404 2.19977404 Gallus gallus 9031 Chordata Chordata 453 5.34e-123   NTclustered gi|2201689789|ref|XM_046943656.1| 9031 g8630 i0 99.203 66.9402390438247 251 2 100 0 1 251 5172 5422 PREDICTED: Gallus gallus signal transducing adaptor molecule 2 (STAM2), transcript variant X2, mRNA blastn 16802 453 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
1410252 1410252 PRJEB75227_P_NODE_6782_length_275_cov_1.544554_g6611_i0 PRJEB75227 6782 275 1.544554 4.2475235 Sus scrofa 9823 Chordata Chordata 95.3 4.14e-15   NTclustered gi|1191801811|ref|XR_002341200.1| 9823 g6611 i0 100 1.65818181818182 51 0 19 0 225 275 2834 2784 PREDICTED: Sus scrofa uncharacterized LOC102166957 (LOC102166957), transcript variant X2, ncRNA blastn 456 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
3961803 3961803 PRJEB75227_P_NODE_7964_length_256_cov_1.207650_g7793_i0 PRJEB75227 7964 256 1.20765 3.091584 Pituophis catenifer 94850 Chordata Chordata 52.8 0.023   NTclustered gi|2893867960|ref|XM_070949806.1| 94852 g7793 i0 100 0.21875 28 0 11 0 127 154 2726 2699 PREDICTED: Pituophis catenifer annectens zinc finger protein 574 (ZNF574), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Colubridae Pituophis Pituophis catenifer
5238159 5238159 PRJEB75227_P_NODE_11085_length_244_cov_0.912281_g10914_i0 PRJEB75227 11085 244 0.912281 2.22596564 Sus scrofa 9823 Chordata Chordata 158 4.53e-34   NTclustered gi|224762785|emb|CU407122.4| 9823 g10914 i0 95 51.0819672131148 100 5 41 0 145 244 76055 76154 Pig DNA sequence from clone CH242-52A15 on chromosome X, complete sequence blastn 12464 158 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
5238161 5238161 PRJEB75227_P_NODE_11165_length_244_cov_0.912281_g10994_i0 PRJEB75227 11165 244 0.912281 2.22596564 Sus scrofa 9823 Chordata Chordata 58.4 4.73e-4   NTclustered gi|1191886276|ref|XR_002344678.1| 9823 g10994 i0 100 0.770491803278688 31 0 13 0 203 233 1321 1291 PREDICTED: Sus scrofa uncharacterized LOC110260999 (LOC110260999), transcript variant X2, misc_RNA blastn 188 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
5238232 5238232 PRJEB75227_P_NODE_9685_length_248_cov_0.891429_g9514_i0 PRJEB75227 9685 248 0.891429 2.21074392 Gallus gallus 9031 Chordata Chordata 401 1.9299999999999994e-107   NTclustered gi|111120395|gb|AC186854.2| 9031 g9514 i0 96.386 79.2338709677419 249 0 100 4 1 248 168222 167982 Gallus gallus BAC clone CH261-10D22 from chromosome z, complete sequence blastn 19650 401 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
7788046 7788046 PRJEB75227_P_NODE_7287_length_267_cov_1.371134_g7116_i0 PRJEB75227 7287 267 1.371134 3.66092778 Sus scrofa 9823 Chordata Chordata 222 1.76e-53   NTclustered gi|195945747|emb|CU468466.12| 9823 g7116 i0 88.649 182.067415730337 185 18 99 3 2 184 49487 49670 Pig DNA sequence from clone CH242-229D21 on chromosome X, complete sequence blastn 48612 222 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
7788068 7788068 PRJEB75227_P_NODE_9647_length_248_cov_1.388571_g9476_i0 PRJEB75227 9647 248 1.388571 3.44365608 Gallus gallus 9031 Chordata Chordata 305 1.56e-78   NTclustered gi|297306136|dbj|AB556497.1| 9031 g9476 i0 90.83 10.5120967741935 229 19 92 2 4 230 175 403 Gallus gallus DNA, CENP-A associated sequence, partial sequence, clone: CAIP#198 blastn 2607 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
10338703 10338703 PRJEB75227_P_NODE_6389_length_281_cov_2.576923_g6218_i0 PRJEB75227 6389 281 2.576923 7.24115363 Gallus gallus 9031 Chordata Chordata 520 5.909999999999999e-143   NTclustered gi|2024360878|ref|XR_005840240.1| 9031 g6218 i0 100 71.0177935943061 281 0 100 0 1 281 1248 968 PREDICTED: Gallus gallus 28S ribosomal RNA (LOC121106977), rRNA blastn 19956 520 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
11198959 11198959 PRJEB75227_P_NODE_7529_length_263_cov_1.400000_g7358_i0 PRJEB75227 7529 263 1.4 3.682 Bovidae 9895 Chordata Chordata 388 1.61e-103   NTclustered gi|2633717494|ref|XR_009740327.1| 9906 g7358 i0 93.208 711.003802281369 265 16 100 2 1 263 82 346 PREDICTED: Bos javanicus dihydrodiol dehydrogenase 3-like (LOC133259245), transcript variant X6, misc_RNA blastn 186994 388 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
11198963 11198963 PRJEB75227_P_NODE_8309_length_253_cov_0.866667_g8138_i0 PRJEB75227 8309 253 0.866667 2.19266751 Phasianidae 9005 Chordata Chordata 390 4.28e-104   NTclustered gi|2919602537|emb|OZ238770.1| 9079 g8138 i0 94.466 2 253 14 100 0 1 253 36102811 36102559 Alectoris rufa genome assembly, chromosome: 5 blastn 506 390 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
11614099 11614099 PRJEB75227_P_NODE_10130_length_247_cov_0.896552_g9959_i0 PRJEB75227 10130 247 0.896552 2.21448344 Alectoris rufa 9079 Chordata Chordata 279 9.41e-71   NTclustered gi|2919603366|emb|OZ238775.1| 9079 g9959 i0 87.059 1.03238866396761 255 24 100 4 1 247 15349747 15350000 Alectoris rufa genome assembly, chromosome: 10 blastn 255 279 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
11614103 11614103 PRJEB75227_P_NODE_10470_length_246_cov_0.901734_g10299_i0 PRJEB75227 10470 246 0.901734 2.21826564 Meleagris gallopavo 9103 Chordata Chordata 344 3.27e-90   NTclustered gi|2721460824|emb|HG999682.4| 9103 g10299 i0 92.213 7.97560975609756 244 18 100 1 1 243 43518001 43518244 Meleagris gallopavo genome assembly, chromosome: 3 blastn 1962 344 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
11614164 11614164 PRJEB75227_P_NODE_7590_length_262_cov_1.375661_g7419_i0 PRJEB75227 7590 262 1.375661 3.60423182 Sus scrofa 9823 Chordata Chordata 117 8.360000000000001e-22   NTclustered gi|1191802949|ref|XR_002341317.1| 9823 g7419 i0 98.485 0.251908396946565 66 1 25 0 5 70 2008 1943 PREDICTED: Sus scrofa translation initiation factor IF-2-like (LOC102160746), transcript variant X5, misc_RNA blastn 66 117 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
13749095 13749095 PRJEB75227_P_NODE_8211_length_253_cov_0.866667_g8040_i0 PRJEB75227 8211 253 0.866667 2.19266751 Felidae 9681 Chordata Chordata 167 7.86e-37   NTclustered gi|2450872132|ref|XR_008418891.1| 9691 g8040 i0 88.028 74.0197628458498 142 15 55 1 112 251 7361 7220 PREDICTED: Panthera pardus uncharacterized LOC128774307 (LOC128774307), transcript variant X6, ncRNA blastn 18727 167 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Panthera Panthera pardus
14164057 14164057 PRJEB75227_P_NODE_9612_length_248_cov_1.782857_g9441_i0 PRJEB75227 9612 248 1.782857 4.42148536 Meleagris gallopavo 9103 Chordata Chordata 254 5.73e-63   NTclustered gi|2721460876|emb|HG999684.4| 9103 g9441 i0 87.615 77.0725806451613 218 27 88 0 1 218 65042000 65041783 Meleagris gallopavo genome assembly, chromosome: 4 blastn 19114 254 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
16712303 16712303 PRJEB75227_P_NODE_10814_length_245_cov_0.906977_g10643_i0 PRJEB75227 10814 245 0.906977 2.22209365 Meleagris gallopavo 9103 Chordata Chordata 322 1.53e-83   NTclustered gi|2721460880|emb|HG999685.4| 9103 g10643 i0 90.283 2.01224489795918 247 22 100 2 1 245 54634453 54634699 Meleagris gallopavo genome assembly, chromosome: 5 blastn 493 322 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
17573559 17573559 PRJEB75227_P_NODE_7454_length_264_cov_1.633508_g7283_i0 PRJEB75227 7454 264 1.633508 4.31246112 Mammalia 40674 Chordata Chordata 121 6.519999999999999e-23   NTclustered gi|2451157076|ref|XR_006654403.2| 9430 g7283 i0 77.169 47.1704545454545 219 43 82 7 10 226 925 1138 PREDICTED: Desmodus rotundus uncharacterized lncRNA (LOC123478968), transcript variant X1, ncRNA blastn 12453 121 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Desmodus Desmodus rotundus
17987247 17987247 PRJEB75227_P_NODE_9415_length_249_cov_0.886364_g9244_i0 PRJEB75227 9415 249 0.886364 2.20704636 Acomys russatus 60746 Chordata Chordata 52.8 0.023   NTclustered gi|2318330557|ref|XM_051163283.1| 60746 g9244 i0 96.875 0.1285140562249 32 0 13 1 97 128 1455 1485 PREDICTED: Acomys russatus zinc finger matrin-type 2 (Zmat2), mRNA blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Acomys Acomys russatus
19261211 19261211 PRJEB75227_P_NODE_3136_length_414_cov_0.868035_g2965_i0 PRJEB75227 3136 414 0.868035 3.5936649 Xenopus laevis 8355 Chordata Chordata 276 2.17e-69   NTclustered gi|157423658|gb|BC153797.1| 8355 g2965 i0 78.744 1 414 86 99 2 1 413 886 474 Xenopus laevis hypothetical protein LOC100126647, mRNA (cDNA clone MGC:181736 IMAGE:8824068), complete cds blastn 414 276 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
20536572 20536572 PRJEB75227_P_NODE_7337_length_266_cov_1.616580_g7166_i0 PRJEB75227 7337 266 1.61658 4.3001028 Meleagris gallopavo 9103 Chordata Chordata 455 1.5900000000000002e-123   NTclustered gi|2721460880|emb|HG999685.4| 9103 g7166 i0 99.598 3.76315789473684 249 1 94 0 18 266 36046353 36046105 Meleagris gallopavo genome assembly, chromosome: 5 blastn 1001 455 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
20536595 20536595 PRJEB75227_P_NODE_9957_length_247_cov_1.793103_g9786_i0 PRJEB75227 9957 247 1.793103 4.42896441 Bos taurus 9913 Chordata Chordata 364 2.519999999999999e-96   NTclustered gi|226437720|gb|AC150858.6| 9913 g9786 i0 93.469 375.854251012146 245 16 99 0 3 247 88196 88440 Bos taurus BAC CH240-431L22 (Children's Hospital Oakland Research Institute Bovine BAC Library complete sequence blastn 92836 364 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
21812477 21812477 PRJEB75227_P_NODE_9918_length_248_cov_0.891429_g9747_i0 PRJEB75227 9918 248 0.891429 2.21074392 Meleagris gallopavo 9103 Chordata Chordata 383 7.0000000000000005e-102   NTclustered gi|2721460871|emb|HG999689.4| 9103 g9747 i0 94.758 58.2661290322581 248 10 100 2 1 248 5377546 5377302 Meleagris gallopavo genome assembly, chromosome: 10 blastn 14450 383 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
23948137 23948137 PRJEB75227_P_NODE_11739_length_242_cov_0.923077_g11568_i0 PRJEB75227 11739 242 0.923077 2.23384634 root 1 Root_unresolved Root_unresolved 381 2.449999999999999e-101   NTclustered gi|393793924|emb|FO082638.4| 9823 g11568 i0 95.041 32.7851239669422 242 12 100 0 1 242 3191 3432 Pig DNA sequence from clone WTSI_1061-68I20 on chromosome Y, complete sequence blastn 7934 381 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
24361426 24361426 PRJEB75227_P_NODE_11080_length_244_cov_0.912281_g10909_i0 PRJEB75227 11080 244 0.912281 2.22596564 Sus scrofa 9823 Chordata Chordata 446 8.639999999999999e-121   NTclustered gi|290964995|emb|FP085596.4| 9823 g10909 i0 99.59 1.59016393442623 244 1 100 0 1 244 114317 114560 Pig DNA sequence from clone CH242-208M4 on chromosome X, complete sequence blastn 388 446 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
26781113 26781113 PRJEB75227_P_NODE_8761_length_251_cov_1.151685_g8590_i0 PRJEB75227 8761 251 1.151685 2.89072935 Staurois parvus 386267 Chordata Chordata 39.7 0.0472   NR CAI9587454.1 386267 g8590 i0 72.2 0.215139442231076 18 5 21.5 0 250 197 16 33 CAI9587454.1 unnamed protein product, partial [Staurois parvus] diamond 54 39.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
26939091 26939091 PRJEB75227_P_NODE_10802_length_245_cov_0.906977_g10631_i0 PRJEB75227 10802 245 0.906977 2.22209365 Callorhinchus milii 7868 Chordata Chordata 114 2.53e-27   NR XP_007900036.2 7868 g10631 i0 68.8 8.82857142857143 80 25 98 0 243 4 1746 1825 XP_007900036.2 LOW QUALITY PROTEIN: acetyl-CoA carboxylase [Callorhinchus milii] diamond 2163 114 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
28708138 28708138 PRJEB75227_P_NODE_1787_length_583_cov_1.868627_g1616_i0 PRJEB75227 1787 583 1.868627 10.89409541 Leucoraja erinaceus 7782 Chordata Chordata 47.8 0.0101   NR XP_055487001.1 7782 g1616 i0 48.5 1.19897084048027 66 30 32.9 3 186 377 152 215 XP_055487001.1 E3 ubiquitin-protein ligase TRIM47-like isoform X1 [Leucoraja erinaceus] diamond 699 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
29458220 29458220 PRJEB75227_P_NODE_5150_length_309_cov_0.991525_g4979_i0 PRJEB75227 5150 309 0.991525 3.06381225 Metazoa 33208 Chordata Chordata 179 4.809999999999999e-54   NR XP_021239395.1 8996 g4979 i0 86.3 12.7961165048544 102 14 99 0 3 308 39 140 XP_021239395.1 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Numida meleagris] diamond 3954 179 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Numididae Numida Numida meleagris
31488128 31488128 PRJEB75227_P_NODE_11276_length_243_cov_1.376471_g11105_i0 PRJEB75227 11276 243 1.376471 3.34482453 Sus scrofa 9823 Chordata Chordata 43.5 0.0205   NR XP_020946894.1 9823 g11105 i0 43.9 1.74074074074074 66 27 69.1 1 16 183 679 744 XP_020946894.1 collagen alpha-2(I) chain-like [Sus scrofa] diamond 423 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
32081610 32081610 PRJEB75227_P_NODE_11358_length_243_cov_0.917647_g11187_i0 PRJEB75227 11358 243 0.917647 2.22988221 Metazoa 33208 Chordata Chordata 57.8 1.87e-7   NR MEE6504714.1 8439 g11187 i0 49.2 2.20987654320988 59 26 72.8 1 62 238 393 447 MEE6504714.1 hypothetical protein [Ascaphus truei] diamond 537 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
32113439 32113439 PRJEB75227_P_NODE_8878_length_251_cov_0.876404_g8707_i0 PRJEB75227 8878 251 0.876404 2.19977404 Metazoa 33208 Chordata Chordata 47.4 8.21e-4   NR XP_013030783.2 8845 g8707 i0 33.9 4.13545816733068 56 37 66.9 0 204 37 198 253 XP_013030783.2 mannose-binding protein [Anser cygnoides] diamond 1038 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;