RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJEB75227", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 9 ✖

tax_kingdom 1

  • Pseudomonadati · 9 ✖

bioproject 1

  • PRJEB75227 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6513774 6513774 PRJEB75227_P_NODE_6786_length_275_cov_1.544554_g6615_i0 PRJEB75227 6786 275 1.544554 4.2475235 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 206 1.83e-48   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g6615 i0 81.6 15.6836363636364 250 44 91 2 19 267 4093615 4093367 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 4313 206 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
26622569 26622569 PRJEB75227_P_NODE_10081_length_247_cov_0.896552_g9910_i0 PRJEB75227 10081 247 0.896552 2.21448344 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 140 2.42e-39   NR MEK6775147.1 3034175 g9910 i0 86.6 0.995951417004049 82 11 99.6 0 246 1 78 159 MEK6775147.1 ribonuclease PH [Bdellovibrionota bacterium] diamond 246 140 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28360534 28360534 PRJEB75227_P_NODE_9566_length_249_cov_0.886364_g9395_i0 PRJEB75227 9566 249 0.886364 2.20704636 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 53.9 2.86e-6   NR MBX2988498.1 2026715 g9395 i0 50 0.481927710843373 40 20 48.2 0 3 122 187 226 MBX2988498.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 120 53.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28392248 28392248 PRJEB75227_P_NODE_9046_length_250_cov_1.491525_g8875_i0 PRJEB75227 9046 250 1.491525 3.7288125 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 66.6 1.47e-10   NR HEY8269344.1 2026715 g8875 i0 43.2 0.972 81 45 97.2 1 248 6 272 351 HEY8269344.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 243 66.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29781475 29781475 PRJEB75227_P_NODE_5991_length_287_cov_1.457944_g5820_i0 PRJEB75227 5991 287 1.457944 4.18429928 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 174 4.68e-51   NR MCX7978065.1 2026715 g5820 i0 92.6 5.94773519163763 95 7 99.3 0 2 286 185 279 MCX7978065.1 type IV pilus twitching motility protein PilT [Pseudobdellovibrionaceae bacterium] diamond 1707 174 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29812956 29812956 PRJEB75227_P_NODE_10331_length_246_cov_0.901734_g10160_i0 PRJEB75227 10331 246 0.901734 2.21826564 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 139 3.66e-36   NR MBX2987305.1 2026715 g10160 i0 78.8 1.96341463414634 80 17 97.6 0 241 2 476 555 MBX2987305.1 aconitate hydratase [Pseudobdellovibrionaceae bacterium] diamond 483 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30666039 30666039 PRJEB75227_P_NODE_9973_length_247_cov_1.643678_g9802_i0 PRJEB75227 9973 247 1.643678 4.05988466 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 89.4 7.05e-19   NR WP_088566235.1 959 g9802 i0 80 1.31174089068826 55 11 66.8 0 75 239 1 55 WP_088566235.1 DUF2914 domain-containing protein [Bdellovibrio bacteriovorus] diamond 324 89.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
30982222 30982222 PRJEB75227_P_NODE_6554_length_279_cov_1.184466_g6383_i0 PRJEB75227 6554 279 1.184466 3.30466014 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 102 4.679999999999999e-23   NR MEK6773178.1 3034175 g6383 i0 52.1 1.03225806451613 96 41 98.9 2 277 2 11 105 MEK6773178.1 acyl-CoA reductase [Bdellovibrionota bacterium] diamond 288 102 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32342289 32342289 PRJEB75227_P_NODE_3199_length_408_cov_1.814925_g3028_i0 PRJEB75227 3199 408 1.814925 7.404894 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 79.3 2.21e-16   NR MBL7554792.1 2026715 g3028 i0 97.8 0.654411764705882 89 2 65.4 0 402 136 1 89 MBL7554792.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 267 79.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;