RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB75227", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB75227 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3961789 3961789 PRJEB75227_P_NODE_6184_length_284_cov_1.848341_g6013_i0 PRJEB75227 6184 284 1.848341 5.24928844 Meloidogyne incognita 6306 Nematoda Nematoda 150 9.04e-32   NTclustered gi|1120600895|gb|KX426061.1| 6306 g6013 i0 79.535 6.98239436619718 215 40 75 4 9 221 221 9 Meloidogyne incognita clone 1 14-3-3 protein mRNA, complete cds blastn 1983 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
5238186 5238186 PRJEB75227_P_NODE_4705_length_326_cov_1.584980_g4534_i0 PRJEB75227 4705 326 1.58498 5.1670348 Strongyloides ratti 34506 Nematoda Nematoda 268 2.7999999999999998e-67   NTclustered gi|1376138619|ref|XM_024649534.1| 34506 g4534 i0 82.258 16.340490797546 310 55 95 0 17 326 1961 1652 Strongyloides ratti Transitional endoplasmic reticulum ATPase (SRAE_1000245600), partial mRNA blastn 5327 268 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
29900722 29900722 PRJEB75227_P_NODE_10591_length_245_cov_1.779070_g10420_i0 PRJEB75227 10591 245 1.77907 4.3587215 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 5.16e-23   NR KRY53845.1 45882 g10420 i0 62.5 8.74285714285714 80 29 98 1 241 2 72 150 KRY53845.1 Calreticulin, partial [Trichinella britovi] diamond 2142 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;