RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB75227", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB75227 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17573541 17573541 PRJEB75227_P_NODE_11014_length_244_cov_0.912281_g10843_i0 PRJEB75227 11014 244 0.912281 2.22596564 Rubricoccaceae 1853227 Bacteria Bacteria 113 9.93e-28   NR WP_094546833.1 716817 g10843 i0 75 2.02868852459016 80 20 98.4 0 244 5 317 396 WP_094546833.1 acyl-CoA dehydrogenase family protein [Rubricoccus marinus] diamond 495 114 0.991228070175439 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubricoccus Rubricoccus marinus
18847374 18847374 PRJEB75227_P_NODE_11115_length_244_cov_0.912281_g10944_i0 PRJEB75227 11115 244 0.912281 2.22596564 Salinibacter 146918 Bacteria Bacteria 254 5.62e-63   NTclustered gi|1419235469|gb|CP030716.1| 146919 g10944 i0 85.774 9.79508196721311 239 34 98 0 1 239 3594891 3595129 Salinibacter ruber strain P13 chromosome, complete genome blastn 2390 254 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;