RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB75227", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJEB75227 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11614154 11614154 PRJEB75227_P_NODE_5810_length_290_cov_1.400922_g5639_i0 PRJEB75227 5810 290 1.400922 4.0626738 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 370 6.53e-98   NTclustered gi|2874253978|emb|OY970303.1| 412054 g5639 i0 89.474 131.558620689655 304 16 99 4 1 288 1903954 1903651 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 38152 370 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27192082 27192082 PRJEB75227_P_NODE_8982_length_251_cov_0.876404_g8811_i0 PRJEB75227 8982 251 0.876404 2.19977404 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 82.4 2.61e-17   NR HKK07360.1 2026742 g8811 i0 82.6 0.549800796812749 46 8 55 0 138 1 1 46 HKK07360.1 class II glutamine amidotransferase [Gemmatimonadota bacterium] diamond 138 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28613277 28613277 PRJEB75227_P_NODE_7647_length_261_cov_1.601064_g7476_i0 PRJEB75227 7647 261 1.601064 4.17877704 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 106 7.27e-25   NR HEY8197810.1 2448054 g7476 i0 98.3 22 58 1 66.7 0 176 3 1 58 HEY8197810.1 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Gemmatimonadales bacterium] diamond 5742 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31449092 31449092 PRJEB75227_P_NODE_10836_length_245_cov_0.906977_g10665_i0 PRJEB75227 10836 245 0.906977 2.22209365 root 1 Root_unresolved Root_unresolved 81.6 4.3e-16   NR MBS1241303.1 2026742 g10665 i0 51.9 2.84081632653061 79 38 96.7 0 244 8 199 277 MBS1241303.1 Saccharopine dehydrogenase [Gemmatimonadota bacterium] diamond 696 82.4 0.990291262135922 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;