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contig_metadata

31 rows where bioproject = "PRJEB75017" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB75017 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2685437 2685437 PRJEB75017_P_NODE_183_length_1635_cov_4.533931_g152_i0 PRJEB75017 183 1635 4.533931 74.12977185 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 2449 0   NTclustered gi|226525339|gb|FJ872375.1| 156588 g152 i0 93.723 233.458103975535 1641 92 100 10 1 1635 28645 27010 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 381704 2449 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
6513489 6513489 PRJEB75017_P_NODE_2966_length_509_cov_1.327982_g2837_i0 PRJEB75017 2966 509 1.327982 6.75942838 Pseudomonadati 3379134 Bacteria Bacteria 230 2.83e-73   NR NBQ57034.1 2006848 g2837 i0 70.7 4.83300589390963 164 45 94.9 1 490 8 79 242 NBQ57034.1 SDR family oxidoreductase [Opitutaceae bacterium] diamond 2460 230 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
19260885 19260885 PRJEB75017_P_NODE_10736_length_282_cov_1.119617_g10607_i0 PRJEB75017 10736 282 1.119617 3.15731994 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 52.8 0.026   NTclustered gi|2874254096|emb|OY970179.1| 412056 g10607 i0 96.774 0.109929078014184 31 1 11 0 165 195 782666 782696 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 31 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
19260900 19260900 PRJEB75017_P_NODE_12036_length_269_cov_1.311224_g11907_i0 PRJEB75017 12036 269 1.311224 3.52719256 Akkermansia glycaniphila 1679444 Bacteria Bacteria 206 1.7899999999999998e-48   NTclustered gi|1093279401|emb|LT629973.1| 1679444 g11907 i0 84 88.9739776951673 225 24 81 9 46 264 1727839 1727621 Akkermansia glycaniphila isolate APytT genome assembly, chromosome: I blastn 23934 206 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia glycaniphila
20536348 20536348 PRJEB75017_P_NODE_9077_length_300_cov_1.378855_g8948_i0 PRJEB75017 9077 300 1.378855 4.136565 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 152 7.58e-41   NR RYD77759.1 2026800 g8948 i0 82.8 0.99 99 17 99 0 2 298 409 507 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 297 152 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26654016 26654016 PRJEB75017_P_NODE_1061_length_828_cov_2.353642_g954_i0 PRJEB75017 1061 828 2.353642 19.48815576 Prosthecobacter sp. 1965333 Bacteria Bacteria 79 2.17e-12   NR HRJ10879.1 1965333 g954 i0 33.5 0.811594202898551 224 104 76.1 10 744 115 7 199 HRJ10879.1 PKD domain-containing protein [Prosthecobacter sp.] diamond 672 79 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
26654040 26654040 PRJEB75017_P_NODE_7881_length_320_cov_1.125506_g7752_i0 PRJEB75017 7881 320 1.125506 3.6016192 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 89.7 2.97e-18   NR PWU13190.1 2026799 g7752 i0 51.2 0.80625 86 37 76.9 2 251 6 17 101 PWU13190.1 MAG: hypothetical protein C5B50_19715 [Verrucomicrobiota bacterium] diamond 258 89.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26685850 26685850 PRJEB75017_P_NODE_9381_length_296_cov_1.399103_g9252_i0 PRJEB75017 9381 296 1.399103 4.14134488 Candidatus Methylacidiphilales bacterium 2720631 Bacteria Bacteria 92.4 2.31e-19   NR HEY0256013.1 2720631 g9252 i0 68.9 1.85472972972973 61 19 61.8 0 183 1 1 61 HEY0256013.1 hydroxylamine reductase [Candidatus Methylacidiphilales bacterium] diamond 549 92.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales     Candidatus Methylacidiphilales bacterium
26844523 26844523 PRJEB75017_P_NODE_16561_length_246_cov_1.208092_g16432_i0 PRJEB75017 16561 246 1.208092 2.97190632 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 75.9 3.78e-15   NR RYD70705.1 2026800 g16432 i0 54.4 0.829268292682927 68 30 82.9 1 35 238 7 73 RYD70705.1 MAG: hypothetical protein EOP84_26235 [Verrucomicrobiaceae bacterium] diamond 204 75.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27097299 27097299 PRJEB75017_P_NODE_17782_length_243_cov_1.835294_g17653_i0 PRJEB75017 17782 243 1.835294 4.45976442 Oceanipulchritudo coccoides 2706888 Bacteria Bacteria 45.4 0.00415   NR WP_163962620.1 2706888 g17653 i0 46.3 0.827160493827161 67 31 79 3 211 20 369 433 WP_163962620.1 PQQ-binding-like beta-propeller repeat protein [Oceanipulchritudo coccoides] diamond 201 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Oceanipulchritudinaceae Oceanipulchritudo Oceanipulchritudo coccoides
27128538 27128538 PRJEB75017_P_NODE_16002_length_248_cov_0.891429_g15873_i0 PRJEB75017 16002 248 0.891429 2.21074392 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 93.2 6.87e-20   NR RYD77759.1 2026800 g15873 i0 61.4 1.00403225806452 83 31 99.2 1 2 247 157 239 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 249 93.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27223597 27223597 PRJEB75017_P_NODE_2343_length_570_cov_1.653924_g2214_i0 PRJEB75017 2343 570 1.653924 9.4273668 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 62.8 1.12e-7   NR MEI7935671.1 2026799 g2214 i0 76.5 0.542105263157895 34 8 17.9 0 468 569 232 265 MEI7935671.1 DUF6531 domain-containing protein [Verrucomicrobiota bacterium] diamond 309 62.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27603034 27603034 PRJEB75017_P_NODE_10564_length_283_cov_1.766667_g10435_i0 PRJEB75017 10564 283 1.766667 4.99966761 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 68.6 3.6e-11   NR MCU0779606.1 2562705 g10435 i0 42.9 0.890459363957597 84 47 89 1 283 32 138 220 MCU0779606.1 phosphatidylinositol-specific phospholipase C [Akkermansiaceae bacterium] diamond 252 68.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
27634585 27634585 PRJEB75017_P_NODE_18184_length_242_cov_2.573964_g18055_i0 PRJEB75017 18184 242 2.573964 6.22899288 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 68.6 8.29e-13   NR MBI5684049.1 2026799 g18055 i0 61.5 1.28925619834711 52 20 64.5 0 242 87 55 106 MBI5684049.1 helix-turn-helix transcriptional regulator [Verrucomicrobiota bacterium] diamond 312 68.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27950266 27950266 PRJEB75017_P_NODE_7025_length_337_cov_0.886364_g6896_i0 PRJEB75017 7025 337 0.886364 2.98704668 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 132 1.84e-33   NR RYD77759.1 2026800 g6896 i0 67 0.997032640949555 112 36 98.8 1 333 1 177 288 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 336 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28013513 28013513 PRJEB75017_P_NODE_16965_length_245_cov_1.360465_g16836_i0 PRJEB75017 16965 245 1.360465 3.33313925 Opitutaceae bacterium TAV1 278956 Bacteria Bacteria 43.1 0.0277   NR EIP96703.1 278956 g16836 i0 42.3 0.636734693877551 52 26 63.7 1 233 78 18 65 EIP96703.1 Na+/phosphate symporter [Opitutaceae bacterium TAV1] diamond 156 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV1
28328988 28328988 PRJEB75017_P_NODE_8406_length_311_cov_0.983193_g8277_i0 PRJEB75017 8406 311 0.983193 3.05773023 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 140 9.36e-38   NR MBS0646964.1 2026799 g8277 i0 63.1 0.993569131832797 103 37 99.4 1 1 309 171 272 MBS0646964.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 309 140 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28455543 28455543 PRJEB75017_P_NODE_10246_length_286_cov_2.065728_g10117_i0 PRJEB75017 10246 286 2.065728 5.90798208 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 69.7 8.67e-12   NR HEX2747647.1 2026801 g10117 i0 59.7 0.65034965034965 62 24 65 1 2 187 196 256 HEX2747647.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 186 69.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28486994 28486994 PRJEB75017_P_NODE_11367_length_275_cov_2.594059_g11238_i0 PRJEB75017 11367 275 2.594059 7.13366225 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 154 7.08e-42   NR HWB04118.1 2026801 g11238 i0 80 0.981818181818182 90 18 98.2 0 6 275 510 599 HWB04118.1 ATPase, T2SS/T4P/T4SS family [Verrucomicrobiales bacterium] diamond 270 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28550276 28550276 PRJEB75017_P_NODE_11887_length_270_cov_1.583756_g11758_i0 PRJEB75017 11887 270 1.583756 4.2761412 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 141 9.12e-37   NR PZR75714.1 2201154 g11758 i0 73 15.7111111111111 89 24 98.9 0 268 2 981 1069 PZR75714.1 MAG: error-prone DNA polymerase [Chthoniobacterales bacterium] diamond 4242 141 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
29276158 29276158 PRJEB75017_P_NODE_7469_length_327_cov_1.818898_g7340_i0 PRJEB75017 7469 327 1.818898 5.94779646 Termitidicoccus mucosus 1184151 Bacteria Bacteria 47.8 0.00135   NR WP_068771161.1 1184151 g7340 i0 37 4.15596330275229 92 53 84.4 2 43 318 5 91 WP_068771161.1 glutamine amidotransferase [Termitidicoccus mucosus] diamond 1359 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
29869019 29869019 PRJEB75017_P_NODE_2931_length_512_cov_1.066059_g2802_i0 PRJEB75017 2931 512 1.066059 5.45822208 Pseudomonadati 3379134 Bacteria Bacteria 100 1.68e-22   NR MDB6131532.1 2026801 g2802 i0 59.7 2.759765625 77 30 45.1 1 232 2 6 81 MDB6131532.1 nicotinamidase-like amidase [Verrucomicrobiales bacterium] diamond 1413 101 0.99009900990099 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
29939566 29939566 PRJEB75017_P_NODE_18691_length_237_cov_2.176829_g18562_i0 PRJEB75017 18691 237 2.176829 5.15908473 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 58.2 2.89e-8   NR HEV7867623.1 2811408 g18562 i0 44.6 0.936708860759494 74 36 93.7 2 7 228 8 76 HEV7867623.1 TIGR02597 family protein [Chthoniobacteraceae bacterium] diamond 222 58.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
30223658 30223658 PRJEB75017_P_NODE_11112_length_278_cov_1.507317_g10983_i0 PRJEB75017 11112 278 1.507317 4.19034126 Luteolibacter yonseiensis 1144680 Bacteria Bacteria 143 3.25e-38   NR WP_200353210.1 1144680 g10983 i0 69.7 2.88129496402878 89 27 96 0 2 268 345 433 WP_200353210.1 glycoside hydrolase family 130 protein [Luteolibacter yonseiensis] diamond 801 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter yonseiensis
30350642 30350642 PRJEB75017_P_NODE_14792_length_251_cov_0.876404_g14663_i0 PRJEB75017 14792 251 0.876404 2.19977404 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 137 2.449999999999999e-38   NR HTL46950.1 2499141 g14663 i0 80.5 0.9800796812749 82 16 98 0 247 2 108 189 HTL46950.1 YoaK family protein [Verrucomicrobiia bacterium] diamond 246 137 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30374941 30374941 PRJEB75017_P_NODE_2672_length_537_cov_1.762931_g2543_i0 PRJEB75017 2672 537 1.762931 9.46693947 Pseudomonadati 3379134 Bacteria Bacteria 60.5 5.04e-7   NR WP_348543608.1 2510640 g2543 i0 32.8 1.94413407821229 183 105 98.3 9 529 2 34 205 WP_348543608.1 beta strand repeat-containing protein, partial [Chthoniobacter sp.] diamond 1044 60.8 0.995065789473684 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
30982195 30982195 PRJEB75017_P_NODE_3934_length_442_cov_1.273713_g3805_i0 PRJEB75017 3934 442 1.273713 5.62981146 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 169 1.36e-48   NR RYD65414.1 2026800 g3805 i0 59.2 0.997737556561086 147 57 99.1 2 2 439 131 275 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 441 169 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31329679 31329679 PRJEB75017_P_NODE_8796_length_304_cov_1.385281_g8667_i0 PRJEB75017 8796 304 1.385281 4.21125424 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 54.3 6.63e-6   NR RYD77759.1 2026800 g8667 i0 41.4 0.858552631578947 87 37 72 3 85 303 50 136 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 261 54.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31740767 31740767 PRJEB75017_P_NODE_7377_length_329_cov_1.734375_g7248_i0 PRJEB75017 7377 329 1.734375 5.70609375 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 75.5 3.43e-13   NR MDH4372957.1 2026799 g7248 i0 53.8 0.592705167173252 65 30 59.3 0 282 88 546 610 MDH4372957.1 glycosyltransferase [Verrucomicrobiota bacterium] diamond 195 75.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32088883 32088883 PRJEB75017_P_NODE_7578_length_325_cov_1.734127_g7449_i0 PRJEB75017 7578 325 1.734127 5.63591275 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 133 1.61e-36   NR MEI6606524.1 2026799 g7449 i0 58.3 1.99384615384615 108 44 99.7 1 1 324 83 189 MEI6606524.1 glycosyl transferase family 1 [Verrucomicrobiota bacterium] diamond 648 133 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32405414 32405414 PRJEB75017_P_NODE_9299_length_297_cov_1.549107_g9170_i0 PRJEB75017 9299 297 1.549107 4.60084779 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 125 4.519999999999999e-31   NR RYD77759.1 2026800 g9170 i0 66.3 0.98989898989899 98 33 99 0 2 295 308 405 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 294 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;