RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB75017" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJEB75017 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9062643 9062643 PRJEB75017_P_NODE_18568_length_242_cov_0.923077_g18439_i0 PRJEB75017 18568 242 0.923077 2.23384634 Deinococcus grandis 57498 Bacteria Bacteria 141 4.52e-29   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g18439 i0 89.381 44.9710743801653 113 11 46 1 9 120 805945 805833 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 10883 141 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
10338409 10338409 PRJEB75017_P_NODE_18069_length_243_cov_0.917647_g17940_i0 PRJEB75017 18069 243 0.917647 2.22988221 Deinococcus wulumuqiensis 980427 Bacteria Bacteria 111 3.56e-20   NTclustered gi|1819261009|gb|CP049357.1| 1288484 g17940 i0 82.576 4.92181069958848 132 18 54 3 74 204 1342188 1342061 Deinococcus wulumuqiensis R12 chromosome, complete genome blastn 1196 111 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
13748978 13748978 PRJEB75017_P_NODE_15251_length_250_cov_0.881356_g15122_i0 PRJEB75017 15251 250 0.881356 2.20339 Thermus 270 Bacteria Bacteria 457 4.1099999999999985e-124   NTclustered gi|1955386990|dbj|AP024305.1| 274 g15122 i0 99.6 37.236 250 1 100 0 1 250 1321125 1321374 Thermus thermophilus HB5008 DNA, complete genome blastn 9309 457 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
24361146 24361146 PRJEB75017_P_NODE_14860_length_251_cov_0.876404_g14731_i0 PRJEB75017 14860 251 0.876404 2.19977404 Thermus sp. NEB1569 2918899 Bacteria Bacteria 313 9.45e-81   NTclustered gi|2199052145|gb|CP092445.1| 2918899 g14731 i0 90.123 32.5816733067729 243 20 96 2 11 251 1555811 1556051 Thermus sp. NEB1569 chromosome, complete genome blastn 8178 313 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NEB1569

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;