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contig_metadata

13 rows where bioproject = "PRJEB75017" and tax_kingdom = "Orthornavirae"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 13 ✖

bioproject 1

  • PRJEB75017 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2685431 2685431 PRJEB75017_P_NODE_17863_length_243_cov_0.917647_g17734_i0 PRJEB75017 17863 243 0.917647 2.22988221 Alphavirus chikungunya 3426298 Viruses Viruses 449 6.65e-122   NTclustered gi|1194463477|gb|KY435472.1| 37124 g17734 i0 100 100 243 0 100 0 1 243 10850 10608 Chikungunya virus isolate 14.02560 non-structural polypeptide and structural polypeptide genes, complete cds blastn 24300 449 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Alphavirus chikungunya
8648713 8648713 PRJEB75017_P_NODE_17787_length_243_cov_1.800000_g17658_i0 PRJEB75017 17787 243 1.8 4.374 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|27447413|gb|AY102920.1| 11276 g17658 i0 100 100 243 0 100 0 1 243 1542 1300 Vesicular stomatitis virus serotype Indiana panhandle-type defective interfering particle Ind-ST blastn 24300 449 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
11198881 11198881 PRJEB75017_P_NODE_4329_length_421_cov_1.117816_g4200_i0 PRJEB75017 4329 421 1.117816 4.70600536 root 1 Root_unresolved Root_unresolved 778 0   NTclustered gi|2649349941|gb|OR995580.1| 11276 g4200 i0 100 99.9857482185273 421 0 100 0 1 421 2566 2986 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 42094 778 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
11198890 11198890 PRJEB75017_P_NODE_9309_length_297_cov_1.392857_g9180_i0 PRJEB75017 9309 297 1.392857 4.13678529 root 1 Root_unresolved Root_unresolved 549 8.029999999999997e-152   NTclustered gi|2649349941|gb|OR995580.1| 11276 g9180 i0 100 100 297 0 100 0 1 297 8098 8394 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 29700 549 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
12888972 12888972 PRJEB75017_P_NODE_7111_length_335_cov_0.839695_g6982_i0 PRJEB75017 7111 335 0.839695 2.81297825 Betacoronavirus pandemicum 3418604 Viruses Viruses 614 3.209999999999999e-171   NTclustered gi|2441312974|gb|OQ403814.1| 2697049 g6982 i0 99.701 100 335 1 100 0 1 335 11441 11775 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MD-CDC-LC1001502/2023, complete genome blastn 33500 614 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
15023483 15023483 PRJEB75017_P_NODE_18072_length_243_cov_0.917647_g17943_i0 PRJEB75017 18072 243 0.917647 2.22988221 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|2649349941|gb|OR995580.1| 11276 g17943 i0 100 100 243 0 100 0 1 243 724 482 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 24300 449 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
17986879 17986879 PRJEB75017_P_NODE_10835_length_280_cov_10.033816_g10706_i0 PRJEB75017 10835 280 10.033816 28.0946848 Mitovirus sp. 2587224 Viruses Viruses 124 5.39e-24   NTclustered gi|1698234317|gb|MN033515.1| 2587224 g10706 i0 92.045 0.314285714285714 88 7 31 0 173 260 111 24 MAG: Mitovirus sp. isolate H1_Rhizo_26_FD_scaffold_6751 sequence blastn 88 124 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Mitovirus sp.
17986890 17986890 PRJEB75017_P_NODE_12035_length_269_cov_1.321429_g11906_i0 PRJEB75017 12035 269 1.321429 3.55464401 Betacoronavirus pandemicum 3418604 Viruses Viruses 497 2.63e-136   NTclustered gi|2316342856|gb|OP624554.1| 2697049 g11906 i0 100 100 269 0 100 0 1 269 24586 24318 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/OH-CDC-QDX41755282/2022, complete genome blastn 26900 497 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18847296 18847296 PRJEB75017_P_NODE_9575_length_293_cov_1.854545_g9446_i0 PRJEB75017 9575 293 1.854545 5.43381685 root 1 Root_unresolved Root_unresolved 536 6.149999999999998e-148   NTclustered gi|2649349941|gb|OR995580.1| 11276 g9446 i0 99.659 100 293 1 100 0 1 293 6685 6977 Mutant Vesicular stomatitis virus clone recombinant VSVdM51-RBD, complete genome blastn 29300 536 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
20122073 20122073 PRJEB75017_P_NODE_11496_length_274_cov_1.631841_g11367_i0 PRJEB75017 11496 274 1.631841 4.47124434 root 1 Root_unresolved Root_unresolved 501 2.08e-137   NTclustered gi|27447413|gb|AY102920.1| 11276 g11367 i0 99.635 100 274 1 100 0 1 274 161 434 Vesicular stomatitis virus serotype Indiana panhandle-type defective interfering particle Ind-ST blastn 27400 501 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Vesiculovirus Vesicular stomatitis virus
21812088 21812088 PRJEB75017_P_NODE_12858_length_261_cov_1.260638_g12729_i0 PRJEB75017 12858 261 1.260638 3.29026518 Betacoronavirus pandemicum 3418604 Viruses Viruses 483 7.12e-132   NTclustered gi|2486544531|gb|OP232863.2| 2697049 g12729 i0 100 100 261 0 100 0 1 261 1736 1476 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-UPHL-220730839479/2022 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 26100 483 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
27097307 27097307 PRJEB75017_P_NODE_562_length_1091_cov_1.584479_g485_i0 PRJEB75017 562 1091 1.584479 17.28666589 Inner Mongolia sediment arena-like virus 2824520 Viruses Viruses 135 6.1e-31   NR YP_010840782.1 2824520 g485 i0 26.9 0.98166819431714 357 244 97.3 8 25 1086 213 555 YP_010840782.1 MAG: putative glycoprotein [Inner Mongolia sediment arena-like virus] diamond 1071 135 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Arenaviridae   Inner Mongolia sediment arena-like virus
30280119 30280119 PRJEB75017_P_NODE_12712_length_262_cov_1.650794_g12583_i0 PRJEB75017 12712 262 1.650794 4.32508028 Chuvivirus 2842604 Viruses Viruses 105 3.29e-24   NR WET19887.1 2842604 g12583 i0 61.6 1.96946564885496 86 33 98.5 0 260 3 261 346 WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1] diamond 516 105 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Chuvivirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;