RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

31 rows where bioproject = "PRJEB75017", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 31 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 31 ✖

bioproject 1

  • PRJEB75017 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
995571 995571 PRJEB75017_P_NODE_18701_length_236_cov_2.779141_g18572_i0 PRJEB75017 18701 236 2.779141 6.55877276 Necator americanus 51031 Nematoda Nematoda 132 1.82e-36   NR XP_064055366.1 51031 g18572 i0 78.2 8.92372881355932 78 17 99.2 0 235 2 133 210 XP_064055366.1 hypothetical protein RB195_002298 [Necator americanus] diamond 2106 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
1409935 1409935 PRJEB75017_P_NODE_18202_length_242_cov_2.017751_g18073_i0 PRJEB75017 18202 242 2.017751 4.88295742 Metazoa 33208 Nematoda Nematoda 125 1.33e-33   NR KAH7708129.1 70226 g18073 i0 70 6.89256198347107 80 24 99.2 0 2 241 165 244 KAH7708129.1 40S ribosomal protein S4 [Aphelenchoides avenae] diamond 1668 125 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
5237951 5237951 PRJEB75017_P_NODE_5065_length_391_cov_1.113208_g4936_i0 PRJEB75017 5065 391 1.113208 4.35264328 Trichinella papuae 268474 Nematoda Nematoda 108 2.45e-24   NR KRZ77407.1 268474 g4936 i0 44.5 12.6598465473146 128 65 97.4 4 386 6 523 645 KRZ77407.1 NADPH--cytochrome P450 reductase [Trichinella papuae] diamond 4950 108 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella papuae
7787726 7787726 PRJEB75017_P_NODE_16767_length_246_cov_0.901734_g16638_i0 PRJEB75017 16767 246 0.901734 2.21826564 Opisthokonta 33154 Nematoda Nematoda 122 5.0899999999999994e-30   NR XP_053591915.1 31234 g16638 i0 75.3 55.5487804878049 73 18 89 0 7 225 588 660 XP_053591915.1 hypothetical protein GCK72_002126 [Caenorhabditis remanei] diamond 13665 123 0.991869918699187 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
7787828 7787828 PRJEB75017_P_NODE_9987_length_289_cov_1.365741_g9858_i0 PRJEB75017 9987 289 1.365741 3.94699149 Strongyloides ratti 34506 Nematoda Nematoda 183 9.089999999999997e-42   NTclustered gi|1376143463|ref|XM_024652111.1| 34506 g9858 i0 80.851 16.5743944636678 235 43 81 2 3 236 296 63 Strongyloides ratti Histone H2A domain and Histone core domain and Histone-fold domain-containing protein (SRAE_2000118900), partial mRNA blastn 4790 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
9062592 9062592 PRJEB75017_P_NODE_12168_length_268_cov_1.164103_g12039_i0 PRJEB75017 12168 268 1.164103 3.11979604 Strongyloides ratti 34506 Nematoda Nematoda 219 2.2899999999999998e-52   NTclustered gi|1376152089|ref|XM_024644563.1| 34506 g12039 i0 81.481 100.589552238806 270 46 100 4 1 268 442 709 Strongyloides ratti Calcium/calmodulin-dependent protein kinase type II subunit delta (SRAE_X000024300), partial mRNA blastn 26958 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
12888942 12888942 PRJEB75017_P_NODE_3411_length_474_cov_2.206983_g3282_i0 PRJEB75017 3411 474 2.206983 10.46109942 root 1 Root_unresolved Root_unresolved 265 4.56e-88   NR GMS85619.1 358040 g3282 i0 79.5 12.4683544303797 151 31 95.6 0 20 472 11 161 GMS85619.1 hypothetical protein PENTCL1PPCAC_7794, partial [Pristionchus entomophagus] diamond 5910 267 0.99250936329588 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
17986888 17986888 PRJEB75017_P_NODE_11715_length_272_cov_1.407035_g11586_i0 PRJEB75017 11715 272 1.407035 3.8271352 Opisthokonta 33154 Nematoda Nematoda 101 3.98e-23   NR OUC39547.1 6335 g11586 i0 56.7 3.09926470588235 90 39 99.3 0 272 3 152 241 OUC39547.1 WD domain, G-beta repeat protein [Trichinella nativa] diamond 843 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
20122083 20122083 PRJEB75017_P_NODE_18616_length_241_cov_5.172619_g18487_i0 PRJEB75017 18616 241 5.172619 12.46601179 Rhabditida 6236 Nematoda Nematoda 241 4.310000000000001e-59   NTclustered gi|38491404|gb|AY372758.1| 27828 g18487 i0 84.647 96.551867219917 241 37 100 0 1 241 281 41 Cooperia oncophora actin mRNA, complete cds blastn 23269 241 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
23087204 23087204 PRJEB75017_P_NODE_6079_length_358_cov_1.642105_g5950_i0 PRJEB75017 6079 358 1.642105 5.8787359 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 224 1.08e-72   NR KAF8364219.1 54126 g5950 i0 86.4 30.6368715083799 118 16 98.9 0 2 355 8 125 KAF8364219.1 cyn-7, partial [Pristionchus pacificus] diamond 10968 224 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
27128532 27128532 PRJEB75017_P_NODE_13342_length_256_cov_1.704918_g13213_i0 PRJEB75017 13342 256 1.704918 4.36459008 Mesorhabditis spiculigera 96644 Nematoda Nematoda 54.7 1.38e-6   NR CAJ0578181.1 96644 g13213 i0 34.1 2.0625 88 51 98.4 3 256 5 86 170 CAJ0578181.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 528 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
28195365 28195365 PRJEB75017_P_NODE_13586_length_254_cov_1.569061_g13457_i0 PRJEB75017 13586 254 1.569061 3.98541494 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 1.1200000000000001e-22   NR VDM36969.1 6265 g13457 i0 56.5 9.95669291338583 85 36 99.2 1 253 2 1229 1313 VDM36969.1 unnamed protein product [Toxocara canis] diamond 2529 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
28321795 28321795 PRJEB75017_P_NODE_11826_length_271_cov_1.242424_g11697_i0 PRJEB75017 11826 271 1.242424 3.36696904 root 1 Root_unresolved Root_unresolved 49.7 1.95e-4   NR KAL3076185.1 157864 g11697 i0 40.3 3.99630996309963 77 38 80.8 3 258 40 1047 1119 KAL3076185.1 hypothetical protein niasHT_038811 [Heterodera trifolii] diamond 1083 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
28644942 28644942 PRJEB75017_P_NODE_6827_length_340_cov_2.228464_g6698_i0 PRJEB75017 6827 340 2.228464 7.5767776 Trichuris trichiura 36087 Nematoda Nematoda 59.7 1.29e-7   NR CDW54937.1 36087 g6698 i0 43.7 2.09117647058824 87 43 76.8 1 340 80 360 440 CDW54937.1 polyadenylate binding protein 1 [Trichuris trichiura] diamond 711 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
29024082 29024082 PRJEB75017_P_NODE_15548_length_249_cov_0.886364_g15419_i0 PRJEB75017 15548 249 0.886364 2.20704636 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 69.7 3.75e-12   NR CAD5220980.1 6326 g15419 i0 51.3 0.963855421686747 80 37 94 1 13 246 78 157 CAD5220980.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 240 69.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
29276155 29276155 PRJEB75017_P_NODE_5189_length_386_cov_3.341853_g5060_i0 PRJEB75017 5189 386 3.341853 12.89955258 Mesorhabditis spiculigera 96644 Nematoda Nematoda 59.7 2.15e-7   NR CAJ0574115.1 96644 g5060 i0 82.1 0.217616580310881 28 5 21.8 0 319 236 114 141 CAJ0574115.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 84 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
29458212 29458212 PRJEB75017_P_NODE_6170_length_356_cov_1.102473_g6041_i0 PRJEB75017 6170 356 1.102473 3.92480388 Rhabditida 6236 Nematoda Nematoda 68.6 1.21e-10   NR VDK87195.1 42156 g6041 i0 48.3 1.51685393258427 60 31 50.6 0 339 160 534 593 VDK87195.1 unnamed protein product [Litomosoides sigmodontis] diamond 540 68.9 0.995645863570392 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
29465335 29465335 PRJEB75017_P_NODE_13870_length_253_cov_0.866667_g13741_i0 PRJEB75017 13870 253 0.866667 2.19266751 Soboliphyme baturini 241478 Nematoda Nematoda 132 6.919999999999998e-35   NR VDP09757.1 241478 g13741 i0 72.3 10.8260869565217 83 23 98.4 0 3 251 250 332 VDP09757.1 unnamed protein product [Soboliphyme baturini] diamond 2739 132 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
29616060 29616060 PRJEB75017_P_NODE_4070_length_435_cov_0.925414_g3941_i0 PRJEB75017 4070 435 0.925414 4.0255509 Metazoa 33208 Nematoda Nematoda 147 5.01e-38   NR KAH7728099.1 70226 g3941 i0 53 7.15862068965517 149 66 100 2 1 435 178 326 KAH7728099.1 polyadenylate-binding protein 4 [Aphelenchoides avenae] diamond 3114 147 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
29686412 29686412 PRJEB75017_P_NODE_1050_length_832_cov_1.507246_g943_i0 PRJEB75017 1050 832 1.507246 12.54028672 Mesorhabditis belari 2138241 Nematoda Nematoda 51.6 0.00166   NR CAJ0950944.1 2138241 g943 i0 38.4 0.263221153846154 73 43 26 2 317 102 104 175 CAJ0950944.1 unnamed protein product, partial [Mesorhabditis belari] diamond 219 51.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
30223672 30223672 PRJEB75017_P_NODE_18352_length_242_cov_0.923077_g18223_i0 PRJEB75017 18352 242 0.923077 2.23384634 Strongylus vulgaris 40348 Nematoda Nematoda 43.1 0.0272   NR VDM75426.1 40348 g18223 i0 28.6 1.04132231404959 84 56 99.2 1 241 2 74 157 VDM75426.1 unnamed protein product [Strongylus vulgaris] diamond 252 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
30319087 30319087 PRJEB75017_P_NODE_18632_length_240_cov_4.760479_g18503_i0 PRJEB75017 18632 240 4.760479 11.4251496 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 63.2 1.77e-10   NR CAD5235605.1 6326 g18503 i0 40.7 1.0125 81 45 97.5 2 5 238 4 84 CAD5235605.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 243 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
30602759 30602759 PRJEB75017_P_NODE_4833_length_399_cov_7.950920_g4704_i0 PRJEB75017 4833 399 7.95092 31.7241708 Meloidogyne graminicola 189291 Nematoda Nematoda 43.5 0.0243   NR AVZ46788.1 189291 g4704 i0 70 0.225563909774436 30 9 22.6 0 51 140 1 30 AVZ46788.1 hypothetical protein [Meloidogyne graminicola] diamond 90 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
30943343 30943343 PRJEB75017_P_NODE_7114_length_334_cov_4.409962_g6985_i0 PRJEB75017 7114 334 4.409962 14.72927308 Opisthokonta 33154 Nematoda Nematoda 168 3.32e-50   NR VDP19351.1 241478 g6985 i0 75.7 72.6287425149701 111 27 99.7 0 1 333 56 166 VDP19351.1 unnamed protein product [Soboliphyme baturini] diamond 24258 169 0.994082840236686 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
31006380 31006380 PRJEB75017_P_NODE_2614_length_544_cov_1.292994_g2485_i0 PRJEB75017 2614 544 1.292994 7.03388736 Rhabditida 6236 Nematoda Nematoda 259 3.92e-84   NR KAJ1363279.1 148309 g2485 i0 77 31.9246323529412 165 38 91 0 33 527 1 165 KAJ1363279.1 DNA-binding transcription factor rap1 [Parelaphostrongylus tenuis] diamond 17367 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Parelaphostrongylus Parelaphostrongylus tenuis
31259258 31259258 PRJEB75017_P_NODE_7735_length_322_cov_1.879518_g7606_i0 PRJEB75017 7735 322 1.879518 6.05204796 Rhabditida 6236 Nematoda Nematoda 119 1.22e-31   NR NP_502794.1 6239 g7606 i0 54.2 2.98136645962733 107 48 99.7 1 1 321 3 108 NP_502794.1 Small ribosomal subunit protein uS13 [Caenorhabditis elegans] diamond 960 120 0.991666666666667 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31329678 31329678 PRJEB75017_P_NODE_8296_length_312_cov_2.062762_g8167_i0 PRJEB75017 8296 312 2.062762 6.43581744 Meloidogyne graminicola 189291 Nematoda Nematoda 65.1 7.61e-10   NR AVZ46778.1 189291 g8167 i0 52.9 0.653846153846154 68 32 65.4 0 109 312 117 184 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 204 65.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31544005 31544005 PRJEB75017_P_NODE_17896_length_243_cov_0.917647_g17767_i0 PRJEB75017 17896 243 0.917647 2.22988221 root 1 Root_unresolved Root_unresolved 102 5.069999999999999e-23   NR KRY39212.1 6334 g17767 i0 61.6 6.44444444444444 73 28 90.1 0 2 220 260 332 KRY39212.1 Methionine synthase [Trichinella spiralis] diamond 1566 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
31796746 31796746 PRJEB75017_P_NODE_7157_length_333_cov_2.880769_g7028_i0 PRJEB75017 7157 333 2.880769 9.59296077 Metazoa 33208 Nematoda Nematoda 132 5.2500000000000005e-33   NR KAI1703871.1 166010 g7028 i0 56.4 14.7387387387387 110 48 99.1 0 1 330 727 836 KAI1703871.1 e1-E2 ATPase domain-containing protein [Ditylenchus destructor] diamond 4908 133 0.992481203007519 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
31804014 31804014 PRJEB75017_P_NODE_4277_length_423_cov_8.180000_g4148_i0 PRJEB75017 4277 423 8.18 34.6014 Meloidogyne graminicola 189291 Nematoda Nematoda 43.5 0.0289   NR AVZ46788.1 189291 g4148 i0 70 0.212765957446809 30 9 21.3 0 51 140 1 30 AVZ46788.1 hypothetical protein [Meloidogyne graminicola] diamond 90 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
32310727 32310727 PRJEB75017_P_NODE_7199_length_333_cov_0.900000_g7070_i0 PRJEB75017 7199 333 0.9 2.997 Onchocerca flexuosa 387005 Nematoda Nematoda 104 2.2799999999999994e-23   NR OZC08324.1 387005 g7070 i0 57.5 6.45045045045045 87 35 76.6 2 39 293 238 324 OZC08324.1 hypothetical protein X798_04675 [Onchocerca flexuosa] diamond 2148 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca flexuosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;