RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB75017", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJEB75017 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10338356 10338356 PRJEB75017_P_NODE_10769_length_281_cov_1.764423_g10640_i0 PRJEB75017 10769 281 1.764423 4.95802863 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 73.6 7.33e-13   NR XP_068355838.1 1144522 g10640 i0 39.8 3.97153024911032 93 51 99.3 2 280 2 270 357 XP_068355838.1 Pumilio-family RNA binding repeat containing protein [Tritrichomonas foetus] diamond 1116 73.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26970754 26970754 PRJEB75017_P_NODE_9922_length_290_cov_1.078341_g9793_i0 PRJEB75017 9922 290 1.078341 3.1271889 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 69.3 2.31e-11   NR EAX72363.1 412133 g9793 i0 48.6 1.44827586206897 70 35 72.4 1 249 40 56 124 EAX72363.1 surface antigen BspA-like, partial [Trichomonas vaginalis G3] diamond 420 69.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29591652 29591652 PRJEB75017_P_NODE_9870_length_290_cov_1.437788_g9741_i0 PRJEB75017 9870 290 1.437788 4.1695852 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 65.9 4.51e-10   NR XP_067774251.1 135588 g9741 i0 40.9 0.682758620689655 66 38 68.3 1 93 290 274 338 XP_067774251.1 Angio-associated migratory cell protein [Histomonas meleagridis] diamond 198 65.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32846839 32846839 PRJEB75017_P_NODE_20_length_3090_cov_4.476301_g12_i0 PRJEB75017 20 3090 4.476301 138.3177009 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 133 2.45e-27   NR EAY10953.1 412133 g12 i0 25.9 1.12233009708738 587 325 49.4 20 251 1777 266 820 EAY10953.1 C2 domain containing protein, partial [Trichomonas vaginalis G3] diamond 3468 133 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;