RNAquarium Metadata Server
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contig_metadata

14 rows where bioproject = "PRJEB75017", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 14 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 14 ✖

bioproject 1

  • PRJEB75017 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6513549 6513549 PRJEB75017_P_NODE_9886_length_290_cov_1.428571_g9757_i0 PRJEB75017 9886 290 1.428571 4.1428559 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 119 8.05e-32   NR MBX3132884.1 2026741 g9757 i0 88.6 0.724137931034483 70 8 72.4 0 290 81 97 166 MBX3132884.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Gemmatimonadaceae bacterium] diamond 210 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
12888875 12888875 PRJEB75017_P_NODE_11071_length_278_cov_2.258537_g10942_i0 PRJEB75017 11071 278 2.258537 6.27873286 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 383 7.99e-102   NTclustered gi|2874253938|emb|OY970263.1| 412054 g10942 i0 91.459 56.568345323741 281 20 100 4 1 278 801409 801130 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 15726 383 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13748993 13748993 PRJEB75017_P_NODE_8731_length_305_cov_1.681034_g8602_i0 PRJEB75017 8731 305 1.681034 5.1271537 Bacteria 2 Bacteria Bacteria 370 6.91e-98   NTclustered gi|2874253938|emb|OY970263.1| 412054 g8602 i0 88.636 141.426229508197 308 29 100 5 1 305 803437 803133 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 43135 370 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16712019 16712019 PRJEB75017_P_NODE_1494_length_706_cov_1.568720_g1371_i0 PRJEB75017 1494 706 1.56872 11.0751632 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 957 0   NTclustered gi|2874253938|emb|OY970263.1| 412054 g1371 i0 91.292 599.407932011331 712 46 99 12 1 704 801768 802471 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 423182 957 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27950258 27950258 PRJEB75017_P_NODE_2345_length_570_cov_1.309859_g2216_i0 PRJEB75017 2345 570 1.309859 7.4661963 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 46.6 0.0262   NR HEY7394616.1 2026741 g2216 i0 42.3 0.373684210526316 71 38 36.3 2 196 402 112 181 HEY7394616.1 biotin-dependent carboxyltransferase family protein [Gemmatimonadaceae bacterium] diamond 213 46.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28486993 28486993 PRJEB75017_P_NODE_10247_length_286_cov_2.028169_g10118_i0 PRJEB75017 10247 286 2.028169 5.80056334 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 147 2.74e-41   NR MBX3133551.1 2026741 g10118 i0 76.8 2.98951048951049 95 22 99.7 0 1 285 179 273 MBX3133551.1 MerR family transcriptional regulator [Gemmatimonadaceae bacterium] diamond 855 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28708121 28708121 PRJEB75017_P_NODE_8767_length_305_cov_0.961207_g8638_i0 PRJEB75017 8767 305 0.961207 2.93168135 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 61.6 1.75e-8   NR MDP3774453.1 2448054 g8638 i0 38.8 0.836065573770492 85 50 83.6 1 43 297 177 259 MDP3774453.1 reverse transcriptase domain-containing protein [Gemmatimonadales bacterium] diamond 255 61.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28834225 28834225 PRJEB75017_P_NODE_1948_length_622_cov_1.479053_g1821_i0 PRJEB75017 1948 622 1.479053 9.19970966 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 45.4 0.0253   NR HEX5727651.1 3047548 g1821 i0 37 0.390675241157556 81 36 34.7 3 527 312 68 142 HEX5727651.1 hypothetical protein [Longimicrobiaceae bacterium] diamond 243 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
29402560 29402560 PRJEB75017_P_NODE_16629_length_246_cov_0.901734_g16500_i0 PRJEB75017 16629 246 0.901734 2.21826564 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 141 8.37e-40   NR HET9041419.1 2448054 g16500 i0 91.4 3.95121951219512 81 7 98.8 0 2 244 116 196 HET9041419.1 methylmalonyl-CoA mutase family protein [Gemmatimonadales bacterium] diamond 972 141 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29433852 29433852 PRJEB75017_P_NODE_15210_length_250_cov_0.881356_g15081_i0 PRJEB75017 15210 250 0.881356 2.20339 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 137 2.95e-35   NR HEY5491996.1 2026741 g15081 i0 80.7 0.996 83 16 99.6 0 2 250 616 698 HEY5491996.1 efflux RND transporter permease subunit [Gemmatimonadaceae bacterium] diamond 249 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31544003 31544003 PRJEB75017_P_NODE_10676_length_282_cov_1.492823_g10547_i0 PRJEB75017 10676 282 1.492823 4.20976086 FCB group 1783270 Bacteria Bacteria 123 6.249999999999999e-34   NR HWA55626.1 2448054 g10547 i0 61.3 16.7021276595745 93 36 98.9 0 281 3 27 119 HWA55626.1 hypothetical protein [Gemmatimonadales bacterium] diamond 4710 124 0.991935483870968 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32025682 32025682 PRJEB75017_P_NODE_15818_length_248_cov_0.891429_g15689_i0 PRJEB75017 15818 248 0.891429 2.21074392 Longimicrobiales bacterium 2910168 Bacteria Bacteria 53.1 7.94e-6   NR MEQ1855701.1 2910168 g15689 i0 45.9 0.737903225806452 61 32 72.6 1 10 189 261 321 MEQ1855701.1 response regulator transcription factor [Longimicrobiales bacterium] diamond 183 53.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
32176788 32176788 PRJEB75017_P_NODE_13738_length_253_cov_1.300000_g13609_i0 PRJEB75017 13738 253 1.3 3.289 Bacteria 2 Bacteria Bacteria 102 2.39e-23   NR MBX3146122.1 2448054 g13609 i0 56.3 5.39525691699605 80 35 94.9 0 240 1 2 81 MBX3146122.1 aspartate aminotransferase family protein [Gemmatimonadales bacterium] diamond 1365 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32689346 32689346 PRJEB75017_P_NODE_12120_length_268_cov_1.487179_g11991_i0 PRJEB75017 12120 268 1.487179 3.98563972 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.1 0.00252   NR MCX5768266.1 2026742 g11991 i0 41.5 0.593283582089552 53 25 59.3 1 17 175 8 54 MCX5768266.1 type II toxin-antitoxin system PemK/MazF family toxin [Gemmatimonadota bacterium] diamond 159 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;