RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB7366" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7366 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
135256 135256 PRJEB7366_P_NODE_18481_length_178_cov_1.398601_g18047_i0 PRJEB7366 18481 178 1.398601 2.48950978 Campylobacter sputorum 206 Bacteria Bacteria 52.8 0.015   NTclustered gi|1216707923|gb|CP019685.1| 1660072 g18047 i0 100 0.157303370786517 28 0 16 0 2 29 51147 51174 Campylobacter sputorum subsp. bovis strain RM8705, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sputorum
6513351 6513351 PRJEB7366_P_NODE_19506_length_173_cov_1.065217_g19072_i0 PRJEB7366 19506 173 1.065217 1.84282541 uncultured Campylobacterota bacterium 120858 Bacteria Bacteria 287 3.6600000000000005e-73   NTclustered gi|346681549|gb|JF740663.1| 120858 g19072 i0 96.532 272.393063583815 173 6 100 0 1 173 98 270 Uncultured epsilon proteobacterium clone 23S_S3M_206 23S ribosomal RNA gene, partial sequence blastn 47124 287 1 Bacteria   Pseudomonadati Campylobacterota         uncultured Campylobacterota bacterium
29774126 29774126 PRJEB7366_P_NODE_13651_length_215_cov_1.338889_g13217_i0 PRJEB7366 13651 215 1.338889 2.87861135 Pseudomonadati 3379134 Bacteria Bacteria 58.5 1.37e-8   NR WP_128994949.1 2044504 g13217 i0 54 3.08372093023256 50 23 69.8 0 15 164 1 50 WP_128994949.1 ferritin-like domain-containing protein [Candidatus Marinarcus aquaticus] diamond 663 58.9 0.99320882852292 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Candidatus Marinarcus Candidatus Marinarcus aquaticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;