RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB7366", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJEB7366 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23087045 23087045 PRJEB7366_P_NODE_20499_length_168_cov_1.195489_g20065_i0 PRJEB7366 20499 168 1.195489 2.00842152 root 1 Root_unresolved Root_unresolved 105 1.03e-24   NR MBL7714317.1 2053517 g20065 i0 83.9 7.98214285714286 56 9 100 0 168 1 93 148 MBL7714317.1 phosphoenolpyruvate carboxykinase (GTP) [Bdellovibrionales bacterium] diamond 1341 106 0.990566037735849 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27761037 27761037 PRJEB7366_P_NODE_3184_length_532_cov_1.289738_g2777_i0 PRJEB7366 3184 532 1.289738 6.86140616 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 53.1 1.39e-4   NR WP_015468758.1 453816 g2777 i0 46.8 0.265037593984962 47 25 26.5 0 1 141 391 437 WP_015468758.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 141 53.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
28392213 28392213 PRJEB7366_P_NODE_4486_length_437_cov_1.393035_g4057_i0 PRJEB7366 4486 437 1.393035 6.08756295 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 165 2.62e-44   NR MBC7370521.1 2026715 g4057 i0 57.2 1.9908466819222 145 62 99.5 0 436 2 510 654 MBC7370521.1 5-histidylcysteine sulfoxide synthase [Pseudobdellovibrionaceae bacterium] diamond 870 165 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28897273 28897273 PRJEB7366_P_NODE_13048_length_221_cov_1.833333_g12614_i0 PRJEB7366 13048 221 1.833333 4.05166593 Pseudobacteriovorax antillogorgiicola 1513793 Bacteria Bacteria 62.8 2.37e-9   NR WP_159455691.1 1513793 g12614 i0 39.7 0.990950226244344 73 42 99.1 1 1 219 438 508 WP_159455691.1 FAD-dependent oxidoreductase [Pseudobacteriovorax antillogorgiicola] diamond 219 62.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax antillogorgiicola
29143024 29143024 PRJEB7366_P_NODE_12729_length_225_cov_1.226316_g12295_i0 PRJEB7366 12729 225 1.226316 2.759211 root 1 Root_unresolved Root_unresolved 53.9 3.3e-6   NR WP_015468752.1 453816 g12295 i0 38.6 1.92 70 39 93.3 1 221 12 376 441 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 432 53.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
31171333 31171333 PRJEB7366_P_NODE_22375_length_159_cov_1.935484_g21941_i0 PRJEB7366 22375 159 1.935484 3.07741956 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 42 0.0202   NR MBL7542758.1 2026715 g21941 i0 43.6 0.735849056603774 39 20 73.6 1 38 154 121 157 MBL7542758.1 glutathione S-transferase family protein [Pseudobdellovibrionaceae bacterium] diamond 117 42 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32752453 32752453 PRJEB7366_P_NODE_7680_length_311_cov_1.630435_g7246_i0 PRJEB7366 7680 311 1.630435 5.07065285 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 82 1.3e-15   NR WP_015468752.1 453816 g7246 i0 51.6 0.877813504823151 91 29 85.9 4 279 13 327 404 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 273 82 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;